expressionSetPheno {OGSA} | R Documentation

## expressionSetPheno

### Description

Returns pheno info

### Usage

    expressionSetPheno(expressionSet)

### Arguments

`expressionSet` | ExpressionSet object containing sets of data and phenotype information

### Value

A list with all specific outlier calls for each molecular type in each case sample

### References

Ochs, M. F., Farrar, J. E., Considine, M., Wei, Y., Meshinchi, S., & Arceci, R. J. (n.d.). Outlier Analysis and Top Scoring Pair for Integrated Data Analysis and Biomarker Discovery. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1-1. doi:10.1109/tcbb.2013.153

### Examples

    data(ExampleData)

     library(Biobase)
    # building the Annotated Data Frame
     phenoData <- AnnotatedDataFrame(
         data.frame(
            type = factor(x = pheno, labels = c("Control", "Case")),
             row.names = colnames(expr)
         )
     )
    # build environment
     inputData <- list2env(list(exprs = expr, meth = meth, cnv = cnv))

    # build expressionSet - other information can be added here
     expressionSet <- ExpressionSet(inputData, phenoData)

    # retrieve phenotype data
     phenotype <- expressionSetPheno(expressionSet)

[Package OGSA version 1.10.0 Index]