LPA {MoonlightR} | R Documentation

## LPA

### Description

This function carries out the literature phenotype analysis (LPA)

### Usage

    LPA(dataDEGs, BP, BPlist)

### Arguments

`dataDEGs` | is output from DEA
`BP` | is biological process
`BPlist` | is list of genes annotated in BP

### Value

table with number of pubmed that affects, increase or decrase genes annotated in BP

### Examples

    data(DEGsmatrix)
    BPselected <- c("apoptosis")
    BPannotations <- DiseaseList[[match(BPselected, names(DiseaseList))]]$ID
    dataLPA <- LPA(dataDEGs = DEGsmatrix[1:5,],
                     BP =  BPselected,
                     BPlist = BPannotations)

[Package MoonlightR version 1.6.1 Index]