checkOutliers {MmPalateMiRNA} | R Documentation

## Check `RGList` object for outlying values

### Description

Checks each of the red and green foreground and background channels in an `RGList` for outlying values.

### Usage

    checkOutliers(obj)
    ## S4 method for signature 'RGList'
    checkOutliers(obj)

### Arguments

`obj` | An `RGList` object

### Details

Detects outliers outside range of mean +/- 2.665 standard deviations. Returns the indexes of outlying observations in each channel (R,Rb and G,Gb).

### Value

Returns a list with the following components

`Rout` | index of outliers in the red channel (`obj$R`)
`Rbout` | index of outliers in the red background channel (`obj$Rb`)
`Gout` | index of outliers in the green channel (`obj$G`)
`Gbout` | index of outliers in the green background channel (`obj$Gb`)

### Methods

`signature(obj = "RGList")`

### See Also

`fixOutliers`, `checkMVs`, `fixMVs`

### Examples

    data(PalateData)
    outliers <- checkOutliers(PalateData)

[Package MmPalateMiRNA version 1.30.0 Index]