TrioSet {MinimumDistance} | R Documentation

## Deprecated constructor for `TrioSet` class

### Description

The `TrioSet` class has been deprecated and may be removed in a future release.

### Usage

    TrioSet(pedigreeData = Pedigree(), sample.sheet, row.names = NULL, lrr, baf,
      featureData, cdfname, drop = TRUE, mindist = NULL, genome = c("hg19",
      "hg18"))

### Arguments

`pedigreeData` | an object of class `Pedigree`
`sample.sheet` | a `data.frame` containing metadata on the trios
`row.names` | a character vector providing row identifiers for the `sample.sheet` argument that match the names of the trios in the `pedigreeData` argument.
`lrr` | a matrix of log R ratios
`baf` | a matrix of B allele frequencies
`featureData` | a `GenomeAnnotatedDataFrame` object for the SNPs/nonpolymorphic markers
`cdfname` | character string indicating the annotation package used to extract physical position and chromosome of markers
`drop` | logical. When FALSE, the dimnames on the log R ratio and BAF arrays is set to NULL
`mindist` | can be either NULL or a matrix of the minimum distance
`genome` | character string providing the UCSC genome build

### Value

`TrioSet`

### Examples

    	path <- system.file("extdata", package="MinimumDistance")
    	load(file.path(path, "logRratio.rda"))
    	load(file.path(path, "baf.rda"))
    	load(file.path(path, "pedigreeInfo.rda"))
    	trioSet <- TrioSet(lrr=logRratio,
    			   baf=baf,
    			   pedigree=Pedigree(pedigreeInfo),
    			   cdfname="human610quadv1bCrlmm",
    			   genome="hg18")

[Package MinimumDistance version 1.24.1 Index]