panelSummary {MetaCyto} | R Documentation

## Summarize markers in panels.

### Description

A function that summarizes markers in cytometry panels.

### Usage

    panelSummary(panelInfo, folder, cluster = TRUE, plotImage = TRUE,
      width = 20, height = 20)

### Arguments

`panelInfo` | A data frame returned by the collectData function. It should contain all the information outputted by the preprocessing.batch function.
`folder` | The directory where the output should be written.
`cluster` | True or False. Used to indicate if the markers and panels should be clustered in the plot.
`plotImage` | True or False. Used to indicate if a plot summarizing markers in panels should be produced.
`width` | Used to specify the width of the plot
`height` | Used to specify the height of the plot

### Value

A dataframe describing what markers are in each panel.

### Examples

    fn=system.file("extdata","",package="MetaCyto")
    fn=list.files(fn,pattern="processed_sample",full.names=TRUE)
    panel_info=collectData(fn,longform=FALSE)
    dir.create("Example_Result")
    PS=panelSummary(panel_info,"Example_Result",cluster=FALSE,width=30,height=20)

[Package MetaCyto version 1.2.1 Index]