printInformationSelect {MetCirc} | R Documentation

## Display information on connected features of selected features

### Description

Displays information on connected features of selected features.

### Usage

    printInformationSelect(groupname, msp = NULL, ind,
     lMatInd, linkMatrixThreshold, similarityMatrix, roundDigits = 2)

### Arguments

`groupname` | `character` vector with groupname of selected feature, vector containing "group" and "name" to display, that is a unique identifier of the features, "group" and "name" have to be separated by `"_"` where "group" is the first and "name" is the last element
`msp` | `MSP`, an S4 object of class `MSP` for information about the selected feature
`ind` | `numeric`
`lMatInd` | `numeric` indices of selected features
`linkMatrixThreshold` | `matrix` that contains information of linked features for given thresholds
`similarityMatrix` | `matrix` that is used to get information on the degree of similarity, `similarityMat` is an ordered version of a similarity matrix, see `?createOrderedSimMat`
`roundDigits` | `numeric`, how many digits should be displayed?

### Details

`printInformationSelect` is for internal use.

### Value

`character` that is in HTML format

### Author(s)

Thomas Naake, thomasnaake@googlemail.com

### Examples

    data("idMSMStoMSP", package = "MetCirc")
    data("binnedMSP", package = "MetCirc")
    ## use only a selection
    binnedMSP <- binnedMSP[c(1:20, 29:48, 113:132, 240:259),]
    similarityMat <- createSimilarityMatrix(binnedMSP)
    groupname <- rownames(similarityMat)
    ## order similarityMat according to mz
    simMat <- createOrderedSimMat(similarityMat, order = "mz")
    groupnameMZ <- rownames(simMat)
    linkMat_thr <- createLinkMatrix(simMat, 0.8, 1)
    ind <- 2
    indMZ <- which(groupname[ind] == truncateName(groupnameMZ, NULL, group = TRUE))
    linkMatInds <- getLinkMatrixIndices(groupnameMZ[indMZ], linkMat_thr)
    MetCirc:::printInformationSelect(groupname = groupname,
     msp = NULL, ind = ind, lMatInd = linkMatInds,
     linkMatrixThreshold = linkMat_thr,
     similarityMatrix = similarityMat, roundDigits = 2)

[Package MetCirc version 1.10.0 Index]