Package: MWASTools
Type: Package
Title: MWASTools: an integrated pipeline to perform metabolome-wide
        association studies
Version: 1.4.0
Date: 2016-06-27
Author: Andrea Rodriguez-Martinez, Joram M. Posma, Rafael Ayala, Ana L. Neves, Maryam Anwar, Jeremy K. Nicholson, Marc-Emmanuel Dumas
Maintainer: Andrea Rodriguez-Martinez <andrea.rodriguez-martinez13@imperial.ac.uk>, Rafael Ayala <r.ayala14@imperial.ac.uk>
Description: MWASTools provides a complete pipeline to perform metabolome-wide association studies. Key functionalities of the package include: quality control analysis of metabonomic data; MWAS using different association models (partial correlations; generalized linear models); model validation using non-parametric bootstrapping; visualization of MWAS results; NMR metabolite identification using STOCSY; and biological interpretation of MWAS results.
License: CC BY-NC-ND 4.0
Depends: R(>= 3.4)
Suggests: RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown
VignetteBuilder: knitr
Imports: glm2, ppcor, qvalue, car, boot, grid, ggplot2, gridExtra,
        igraph, SummarizedExperiment, KEGGgraph, RCurl, KEGGREST,
        ComplexHeatmap, stats, utils
biocViews: Metabolomics, Lipidomics, Cheminformatics, SystemsBiology,
        QualityControl
NeedsCompilation: no
LazyData: true
Encoding: UTF-8
Packaged: 2018-05-01 03:53:20 UTC; biocbuild
Built: R 3.5.0; ; 2018-05-01 12:25:11 UTC; windows
