reportResults {MMDiff2} | R Documentation

## report results

### Description

retrieve results of differential binding analysis

### Usage

    reportResults(MD, diff.method = "MMD.locfit", th = 0.1, whichContrast = 1,
      rm.oulier = TRUE, bUsePval = FALSE)

### Arguments

`MD` | DBAmmd Object. This Object can be created using `DBAmmd()`.
`diff.method` | method used to determine p-values and false discovery rates. Currently only 'MMD.locfit' implemented. (DEFAULT: 'MMD.locfit')
`th` | significance threshold for differential called peaks (DEFAULT: 0.1)
`whichContrast` | index determining which of the set contrast should be used. (DEFAULT: 1)
`rm.oulier` | if TRUE, significant peaks with high within-group distances are not reported. (DEFAULT: TRUE)
`bUsePval` | if TRUE p-values instead of FDRs are used (DEFAULT: FALSE)

### Examples

    data("MMD")
    res <- reportResults(MMD)

[Package MMDiff2 version 1.8.0 Index]