Package: MIRA
Version: 1.2.0
Date: 2018-04-17
Title: Methylation-Based Inference of Regulatory Activity
Description: MIRA measures the degree of "dip" in methylation
    level surrounding a regulatory site of interest, such as a
    transcription factor binding site, for instances of that
    type of site across the genome which can then be used to 
    infer regulatory activity.
Authors@R: c(person("Nathan", "Sheffield", role=c("aut")),
	person("John", "Lawson", email="jtl2hk@virginia.edu", role=c("aut", "cre")),
	person("Christoph", "Bock", role=c("ctb")))
Author: Nathan Sheffield <http://www.databio.org> [aut],
    Christoph Bock [ctb],
    John Lawson [aut, cre]
Maintainer: John Lawson <jtl2hk@virginia.edu>
Depends: R (>= 3.4)
Imports: BiocGenerics, S4Vectors, IRanges, GenomicRanges, data.table,
        ggplot2, Biobase, stats, bsseq, methods
Suggests: knitr, parallel, testthat, BiocStyle, rmarkdown,
        AnnotationHub, LOLA
VignetteBuilder: knitr
License: GPL-3
biocViews: DNAMethylation, GeneRegulation, GenomeAnnotation,
        SystemsBiology, FunctionalGenomics, ChIPSeq, MethylSeq,
        Sequencing, Epigenetics, Coverage
URL: http://databio.org/mira
BugReports: https://github.com/databio/MIRA
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-05-01 04:19:06 UTC; biocbuild
Built: R 3.5.0; ; 2018-05-01 12:22:31 UTC; windows
