as.Genesets {MIGSA} | R Documentation

## Creates a GeneSetCollection from a list

### Description

`as.Genesets` creates a GeneSetCollection object from the data present in a list. Each element will parse to a GeneSet. For each list element, its name will be the GeneSet setName, and the content are the genes.

### Usage

    as.Genesets(x, ...)

    ## S4 method for signature 'list'
    as.Genesets(x, is_GO = FALSE)

### Arguments

`x` | list of character vectors which are the genes corresponding to each GeneSet. The list must have names (unique).
`...` | not in use.
`is_GO` | logical indicating if this gene sets are from the Gene Ontology. If true, then each GeneSet setName must be a GO id.

### Value

A GeneSetCollection object.

### See Also

`Genesets-enrichr`

`geneSetsFromFile`

`loadGo`

### Examples

    ## Lets create a list with three manually created gene sets and load it as a
    ## GeneSetCollection object.
    myGs1 <- as.character(1:10);
    myGs2 <- as.character(15:21);
    myGs3 <- as.character(25:30);
    myGssList <- list(myGs1, myGs2, myGs3);
    names(myGssList) <- c("myGs1", "myGs2", "myGs3");
    myGss <- as.Genesets(myGssList);

[Package MIGSA version 1.4.0 Index]