IGSAinput-getterSetters {MIGSA} | R Documentation

## Accessors for IGSAinput class

### Description

Getters and setters functions to access IGSAinput object slots.

### Usage

    "IGSAinput-getterSetters"(object)

    name(object)

    ## S4 method for signature 'IGSAinput'
    name(object)

    name(object) <- value

    ## S4 replacement method for signature 'IGSAinput'
    name(object) <- value

    fitOptions(object)

    ## S4 method for signature 'IGSAinput'
    fitOptions(object)

    fitOptions(object) <- value

    ## S4 replacement method for signature 'IGSAinput'
    fitOptions(object) <- value

    exprData(object)

    ## S4 method for signature 'IGSAinput'
    exprData(object)

    exprData(object) <- value

    ## S4 replacement method for signature 'IGSAinput'
    exprData(object) <- value

    geneSetsList(object)

    ## S4 method for signature 'IGSAinput'
    geneSetsList(object)

    geneSetsList(object) <- value

    ## S4 replacement method for signature 'IGSAinput'
    geneSetsList(object) <- value

    gseaParams(object)

    ## S4 method for signature 'IGSAinput'
    gseaParams(object)

    gseaParams(object) <- value

    ## S4 replacement method for signature 'IGSAinput'
    gseaParams(object) <- value

    seaParams(object)

    ## S4 method for signature 'IGSAinput'
    seaParams(object)

    seaParams(object) <- value

    ## S4 replacement method for signature 'IGSAinput'
    seaParams(object) <- value

### Arguments

`object` | IGSAinput object.
`value` | value to replace in the slot.

### Value

Modified IGSAinput object or desired slot.

### See Also

`IGSAinput-class`

### Examples

    ## Lets create a basic IGSAinput object.
    ## First create a expression matrix.
    maData <- matrix(rnorm(10000),ncol=4);
    rownames(maData) <- 1:nrow(maData); # It must have rownames (gene names).
    maExprData <- new("MAList",list(M=maData));

    ## Now lets create the FitOptions object.
    myFOpts <- FitOptions(c("Cond1", "Cond1", "Cond2", "Cond2"));

    ## And now we can create our IGSAinput ready for MIGSA.
    igsaInput <- IGSAinput(name="igsaInput", expr_data=maExprData,
    fit_options=myFOpts);

    ## Lets get igsaInput values, and modify its name.
    name(igsaInput);
    name(igsaInput) <- "newName";
    fitOptions(igsaInput);
    exprData(igsaInput);
    geneSetsList(igsaInput);
    gseaParams(igsaInput);
    seaParams(igsaInput);

[Package MIGSA version 1.4.0 Index]