dat {MBttest} | R Documentation

## The Transcriptomic data and t-test results.

### Description

t-value and rho are results ouputed by mbttest.

### Usage

    data("dat")

### Format

A data frame with 13409 observations on the following 16 variables.

`tagid`

  a numeric vector

`geneid`

  a numeric vector

`name`

  a string vector

`chr`

  a string vector

`strand`

  a character vector

`pos`

  a numeric vector

`anno`

  a string vector

`Jurk.NS.A`

  a numeric vector

`Jurk.NS.B`

  a numeric vector

`Jurk.NS.C`

  a numeric vector

`Jurk.48h.A`

  a numeric vector

`Jurk.48h.B`

  a numeric vector

`Jurk.48h.C`

  a numeric vector

`beta_t`

  a numeric vector

`rho`

  a numeric vector

`symb`

  a character vector

### Details

t-values `(beta_t)`and means over all replicate libraries in two conditions are used to make MA plot. The count data of DE isoforms are selected by symb =`"+"` and W(omega) and used to make heatmap using myheatmap function.

### Value

ID, information, count data of RNA reads,`t-value` and `rho-value`, symbol.

### References

Yuan-De Tan Anita M. Chandler, Arindam Chaudhury, and Joel R. Neilson(2015) A Powerful Statistical Approach for Large-scale Differential Transcription Analysis.Plos One. DOI: 10.1371/journal.pone.0123658.

### Examples

    data(dat)
    ## maybe str(dat) ; plot(dat) ...

[Package MBttest version 1.8.1 Index]