BatchRemove             Batch effect removal
CellCycleView           Estimate cell cycle time for all samples
                        compared to control sample and view.
CorrView                Visualize the correlation between two object
CutoffCalling           Call cutoff
DensityDiffView         Density plot for beta score deviation between
                        Control and Treatment
DensityView             Density plot for gene beta scores in Control
                        and Treatment
EnrichAB                Enrichment analysis for Positive and Negative
                        selection genes
EnrichSquare            Enrichment analysis for selected treatment
                        related genes
EnrichedGSEView         View enriched terms in GSEA
EnrichedView            View enriched terms
FluteMLE                Downstream analysis based on MAGeCK-MLE result
FluteRRA                Downstream analysis based on MAGeCK-RRA result
HeatmapView             Calculate the similarity between samples and
                        plot heatmap
IdentBarView            Identical bar plot
KeggPathwayView         Kegg pathway view
MAView                  MAplot of gene beta scores
MLE_Data                Gene summary table in MAGeCK MLE results
MapRatesView            View mapping ratio
NormalizeBeta           Normalize gene beta scores
RRA_Data                Gene summary data generated by running MAGeCK
                        RRA
RankView                View the rank of gene points
ReadBeta                Read gene beta scores
ReadRRA                 Read MAGeCK-RRA data
ScatterView             Scatter plot
Selector                Select signatures from candidate list
                        (according to the consistence in most samples).
SquareView              Scatter plot of 9-Square
TransGeneID             Gene ID conversion between ENTREZID and SYMBOL
ViolinView              Violin plot
Zuber_Essential         Core essential gene list
arrangePathview         Kegg pathway view and arrange grobs on page
enrich.DAVID            Do enrichment analysis using DAVID
enrich.GOstats          Do enrichment analysis using GOstats
enrich.GSE              GSEA
enrich.HGT              Do enrichment analysis using Hypergeometric
                        test
enrich.ORT              Do enrichment analysis using
                        over-representation test
enrichment_analysis     Enrichment analysis
getOrg                  Determine the gene annotation package.
normalize.loess         normalize.loess
