Package: MAGeCKFlute
Type: Package
Title: Integrative analysis pipeline for pooled CRISPR functional
        genetic screens
Version: 1.0.1
Date: 2018-10-05
Author: Wubing Zhang, Feizhen Wu, Binbin Wang
Maintainer: Wubing Zhang<Watson5bZhang@gmail.com>
Description: MAGeCKFlute is designed to surporting downstream analysis, utilizing the gene summary data provided through MAGeCK or MAGeCK-VISPR. Quality control, normalization, and screen hit identification for CRISPR screen data are performed in pipeline. Identified hits within the pipeline are categorized based on experimental design, and are subsequently interpreted by functional enrichment analysis.
License: GPL (>=3)
VignetteBuilder: knitr
Depends: R (>= 3.5), ggplot2, stats, grDevices, utils, pathview,
        gridExtra
Suggests: knitr, rmarkdown, BiocStyle, org.Mm.eg.db
Imports: ggExtra, ggsci, ggrepel, clusterProfiler, png, data.table,
        pheatmap, RColorBrewer, sva, GOstats, Category, DOSE, biomaRt,
        grid
LazyData: TRUE
NeedsCompilation: no
biocViews: Workflow, CRISPR, PooledScreens, QualityControl,
        Normalization, MultipleComparison, FunctionalGenomics,
        GeneSetEnrichment, Pathways, Visualization
RoxygenNote: 6.0.1
Packaged: 2018-10-06 03:56:01 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/MAGeCKFlute
git_branch: RELEASE_3_7
git_last_commit: 87b8287
git_last_commit_date: 2018-10-05
Date/Publication: 2018-10-05
Built: R 3.5.1; ; 2018-10-06 10:30:38 UTC; windows
