a922f2544b436d4baea5537dd3cd5354 *CITATION
141d7039a2eef3cc066be487e9d101e1 *DESCRIPTION
e5ab8fc36593747faeecbb1631bab616 *INDEX
8dcd6de0ecd24096ee2e653830653131 *Meta/Rd.rds
4c3554028c2f6030bf35b4603960780b *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
4b9a75e344fda0b4f110a37a444eb6d0 *Meta/hsearch.rds
d6601bf61d5ba2283e7bab9b2e8d7f45 *Meta/links.rds
d1dd48e5ae6ab6de610939ce20b66918 *Meta/nsInfo.rds
4a2b205c9d5bd60fea85f3feedc1165a *Meta/package.rds
d3ca3690b86bd0855369cb0d58edf497 *Meta/vignette.rds
861641a6de00d3a8bcf1b6ddae8b28a1 *NAMESPACE
781899a06acaaaa8596c45d1f240e9a4 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/LOLA
2793ab26498886f6a8ab3110432fb0a4 *R/LOLA.rdb
3cf3b1215060f85e5a4fa1cf8f05f6aa *R/LOLA.rdx
0defdf6d57daf84628f1f4746e5c433e *data/sample_input.RData
4143de810969370e9d4dde813314c121 *data/sample_universe.RData
77479d855769a35d74a7a4ef23809d25 *doc/choosingUniverse.R
ab8ecf837ac883c0c5587e2143707970 *doc/choosingUniverse.Rmd
39ada376c87c0052cb89c7df8432d535 *doc/choosingUniverse.html
10635777aed086ae00d20560e01b4f44 *doc/gettingStarted.R
f203a26bdd7139fe5360f13486af09d9 *doc/gettingStarted.Rmd
8cbc09286b3fedd94f4049e82c694975 *doc/gettingStarted.html
85222a6636e14ddad8fb7579293991a2 *doc/index.html
4282708ee652a1997cef00080bba8653 *doc/usingLOLACore.R
09247d5a0ee802b06a452dd4a2d9f05e *doc/usingLOLACore.Rmd
8994174260cf2a9ad58a3226e078f834 *doc/usingLOLACore.html
8a0e9d873cc0409b0ca4e83103a458e4 *extdata/examples/combined_regions.bed
0abeb2e38c96db3c248da710a90ad5c4 *extdata/hg19/ucsc_example/collection.txt
d27f1ef73a44abc577b95ac8b7858098 *extdata/hg19/ucsc_example/index.txt
2efe7d09742fbd7d5668dcd0c8d15db3 *extdata/hg19/ucsc_example/regions/cpgIslandExt.bed
c91cf10ca317235a54ff5f26c2ddb51c *extdata/hg19/ucsc_example/regions/laminB1Lads.bed
77a3e268a8d6bf32613d5cfd46328eef *extdata/hg19/ucsc_example/regions/numtSAssembled.bed
b81ae934b502bda2ec59f31be5ee7675 *extdata/hg19/ucsc_example/regions/vistaEnhancers.bed
0d6aacd8d87eea2c5b1ccfc09971d561 *extdata/hg19/ucsc_example/regions/vistaEnhancers_colNames.bed
59cd3432078d90b537ef01021a9de7af *extdata/hg19/ucsc_example/sizes.txt
0abeb2e38c96db3c248da710a90ad5c4 *extdata/multi/collection1/collection.txt
d27f1ef73a44abc577b95ac8b7858098 *extdata/multi/collection1/index.txt
ec6fce6a86d27a7b09ceed833ce4b556 *extdata/multi/collection1/regions/cpgIslandExt.bed
a97b82aa363c1e9480170298f7fa3cbe *extdata/multi/collection1/regions/laminB1Lads.bed
01d9b39aebef8ea39e627474374c0d85 *extdata/multi/collection1/regions/vistaEnhancers.bed
2a6cddabb1aac76451c69a354f0b249f *extdata/multi/collection1/sizes.txt
d27f1ef73a44abc577b95ac8b7858098 *extdata/multi/collection2/index.txt
ec6fce6a86d27a7b09ceed833ce4b556 *extdata/multi/collection2/regions/cpgIslandExt.bed
a97b82aa363c1e9480170298f7fa3cbe *extdata/multi/collection2/regions/laminB1Lads.bed
01d9b39aebef8ea39e627474374c0d85 *extdata/multi/collection2/regions/vistaEnhancers.bed
2a6cddabb1aac76451c69a354f0b249f *extdata/multi/collection2/sizes.txt
ef69bcd9775360a263093ba83f63a6c9 *help/AnIndex
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9762bdd792e00bef1e6975319fc12c3f *help/LOLA.rdx
1406a79c32edc4bb2f331e9f641780f1 *help/aliases.rds
20a305651e32492e86a8a690fd28e1e4 *help/figures/LOLA-logo.png
8d878e55a799ffd511bb310b967449ad *help/paths.rds
aa5ce8cce17096d8fc8b51b5c25a4c46 *html/00Index.html
ed848a54697abc4e3cadc5981a144759 *html/LOLA.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
946c0aaa18acffeccac0a0cbe8b10311 *html/buildRestrictedUniverse.html
79b213d5427aeb604bef61e95d2cb210 *html/checkUniverseAppropriateness.html
85d80cd2b8683dac88aa5a3ac8960a57 *html/cleanws.html
aa51b2eca92b84bc8a693c036ec42c3c *html/countOverlapsAnyRev.html
70ccf008b1eee8cb312d607860b7e03c *html/extractEnrichmentOverlaps.html
e7008313b7a1fe028adfab3075c344f3 *html/getRegionFile.html
a2c2d010066188902fe8c1f6330aca69 *html/getRegionSet.html
7162d90e06c60048050234761cb354e7 *html/lapplyAlias.html
2f74c300bef126f2e5a42a58f9773c86 *html/listRegionSets.html
a18e5e2f68c2c59a2ad26c13d35c08be *html/listToGRangesList.html
fba14fdf7929afe0e57afc715448563d *html/loadRegionDB.html
8013e8e621bda71a128e98c9c76f609c *html/mergeRegionDBs.html
430495f9f197da7078fd9c3f118f08e2 *html/nlist.html
91bfc9dcf39f6aad1d9122d2b918d5ae *html/plotTopLOLAEnrichments.html
280629ec81377541944fc86cb10ead0d *html/readBed.html
569fded57ef96812cb548036be89a0b9 *html/readCollection.html
beffc5a1646a4bcc889824ebd29e9c1f *html/readCollectionAnnotation.html
23acaf4dae27a19b0b554a77624e9e42 *html/readCollectionFiles.html
143a1128c6bc268f7a322cdeaf7b2d3e *html/readRegionGRL.html
32c475962407057ce056ce6e5eb0518f *html/readRegionSetAnnotation.html
5b784a0eed30368c92f2830abb2707a4 *html/redefineUserSets.html
b7e8ffc5fbecce756f3698d1593b9539 *html/replaceFileExtension.html
4920ca607ea548c061f53b6b1a7fba60 *html/runLOLA.html
c5f12113d6aef91f5528328cc2fd21c2 *html/sampleGRL.html
4fafd78c0a696a9da21b09ac8e0e36cf *html/setLapplyAlias.html
cf813f4c177f5f4326eaa4c7e5b7664d *html/setSharedDataDir.html
f64d2206177d7f0a9aebd4e7f9c2be89 *html/splitDataTable.html
4b25a788e8a83b15ae8b911453a633d1 *html/splitFileIntoCollection.html
d379e9a407f17b8156619b2346af26f9 *html/userSets.html
1d5c5b18de4cb11bca71fb2ddc36850b *html/userUniverse.html
4dc414ab14e7e8cb65a9fcbd72b71ec1 *html/write.tsv.html
f67bda22f274ec8a8b50e7670b5f817c *html/writeCombinedEnrichment.html
a9f0cd44a33356cef59041ab6969d599 *html/writeDataTableSplitByColumn.html
6662a2735721f99529114c9c0c1a95e4 *scripts/LOLA
2197004cbfb72f0b77fb1fafec0c6bdd *web/index.html
9d6c306930e625fdd0c9fd13c2c7ffdb *web/webComponents/ajax-loader.gif
592477d76c8e6a9898b729f9608becd2 *web/webComponents/d3.min.js
d307496efe5fbac7d5164c5ef8536971 *web/webComponents/gridstyle.css
