getcoexpr {LINC} | R Documentation

## Get IDs For Co-Expressed Genes from The 'LINC' Class

### Description

`getcoexpr` provides access to co-expressed genes of a query in `'LINC'` objects.

### Usage

    getcoexpr(input,
              query   = NULL,
              keyType = NULL)

### Arguments

`input` | a `'LINCcluster'` or `'LINCsingle'` object
`query` | for a `'LINCcluster'` the name of the query gene
`keyType` | The `'keyType'` (gene system) for the output.

### Value

a vector containing the co-expressed genes for a query

### Author(s)

Manuel Goepferich

### Examples

    data(BRAIN_EXPR)
    # Get the co-expressed genes for the query gene '55384' alias MEG3
    getcoexpr(crbl_cluster, query = "55384")

    # The co-expressed genes can also be returned as gene symbols.
    getcoexpr(crbl_cluster, query = "55384", keyType = 'SYMBOL')

[Package LINC version 1.8.0 Index]