neighbor_ray_plot {IrisSpatialFeatures} | R Documentation

## Plot nearest neighbor ray plots for each samples

### Description

Plot nearest neighbor ray plots for each samples

### Usage

    neighbor_ray_plot(x, ...)

    ## S4 method for signature 'ImageSet'
    neighbor_ray_plot(x, from_type, to_type,
      from_col = "#EE7600", to_col = "#028482", format = ".pdf",
      plot_dir = "./", lineColor = "#666666", use_pixel = FALSE, height = 7,
      width = 10)

### Arguments

`x` | An IrisSpatialFeatures ImageSet object
`...` | Additional arguments.
`from_type` | Cell type from which the rays are drawn
`to_type` | Cell type to which the rays are drawn
`from_col` | Color for the 'from' cell-type (Default: '#EE7600')
`to_col` | Color for the 'to' cell-type (Default: '#028482')
`format` | Format of the output file, can be '.pdf' or '.png' (Default: '.pdf')
`plot_dir` | Directory in which the images are written (Default: './')
`lineColor` | Color of the rays (Default: '#666666')
`use_pixel` | use pixels instead of micrometer for distance measurements (default: FALSE)
`height` | Height of the pdf. (Default: 7)
`width` | Width of the pdf. (Default: 10)

### Value

nearest neighbor ray plots

### Examples

    #loading pre-read dataset
    dataset <- IrisSpatialFeatures_data
    dataset <- extract_nearest_neighbor(dataset)
    get_nearest_neighbors(dataset,"SOX10+ PDL1+")
    plot_dir <- file.path('./ray_plots')
    if (!file.exists(plot_dir)){
     dir.create(file.path(plot_dir))
    }

[Package IrisSpatialFeatures version 1.3.0 Index]