collapse_markers {IrisSpatialFeatures} | R Documentation

## This function collapses two markers into one, and reruns the counting of cells. Mostly a convenience function for the Shiny interface so we start with a completely split set successively adding more markers

### Description

This function collapses two markers into one, and reruns the counting of cells. Mostly a convenience function for the Shiny interface so we start with a completely split set successively adding more markers

### Usage

    collapse_markers(image_set, marker1, marker2, combined)

    ## S4 method for signature 'ImageSet'
    collapse_markers(image_set, marker1, marker2, combined)

### Arguments

`image_set` | IrisSpatialFeatures ImageSet object.
`marker1` | Name of the first marker that should be collapsed.
`marker2` | Name of the second marker that should be collapsed.
`combined` | Name of the combined marker.

### Value

IrisSpatialFeatures ImageSet object.

### Examples

    dataset <- IrisSpatialFeatures_data
    ds <- collapse_markers(dataset,marker1="SOX10+ PDL1+",marker2="SOX10+ PDL1-", combined="SOX10+")

[Package IrisSpatialFeatures version 1.3.0 Index]