plot_interactions {IrisSpatialFeatures} | R Documentation

## Interaction summary plot for all cell-types and all samples in a dataset

### Description

Interaction summary plot for all cell-types and all samples in a dataset

### Usage

    plot_interactions(x, ...)

    ## S4 method for signature 'ImageSet'
    plot_interactions(x, label, ordering = NULL,
      normalize = TRUE, palette = NULL, celltype_order = NULL,
      xlim_fix = 13, topbar_cols = "darkgrey")

### Arguments

`x` | IrisSpatialFeatures ImageSet object to be plotted
`...` | Additional arguments
`label` | The cell type the interaction profile should be plotted for
`ordering` | Ordering of the samples (default: NULL)
`normalize` | Normalize the interactions with a given cell-type, so they sum up to 1 (default: TRUE)
`palette` | Color palette for all the cell-types (default: Spectral scheme from RColorbrewer)
`celltype_order` | Order in which the cell-types are displayed. (default: Alphabethically)
`xlim_fix` | Whitespace on the right side so the legend can be displayed clearly. (default: 13)
`topbar_cols` | Color of the barplots that are shown on top. (default: 'darkgrey')

### Value

plot of all cell-types and samples interactions

### Examples

    #loading pre-read dataset
    dataset <- IrisSpatialFeatures_data
    dataset <- extract_interactions(dataset)
    plot_interactions(dataset,'SOX10+ PDL1+',xlim_fix=3)

[Package IrisSpatialFeatures version 1.3.0 Index]