IRangesList-class {IRanges} | R Documentation

## List of IRanges and NormalIRanges

### Description

`IRangesList` and `NormalIRangesList` objects for storing `IRanges` and `NormalIRanges` objects respectively.

### Constructor

  `IRangesList(..., compress=TRUE)`: The `...` argument accepts either a comma-separated list of `IRanges` objects, or a single `LogicalList` / logical `RleList` object, or 2 elements named `start` and `end` each of them being either a list of integer vectors or an IntegerList object. When `IRanges` objects are supplied, each of them becomes an element in the new `IRangesList`, in the same order, which is analogous to the `list` constructor. If `compress`, the internal storage of the data is compressed.

### Coercion

In the code snippets below, `from` is a list-like object.

  `as(from, "SimpleIRangesList")`: Coerces `from`, to a `SimpleIRangesList`, requiring that all `IntegerRanges` elements are coerced to internal `IRanges` elements. This is a convenient way to ensure that all `IntegerRanges` have been imported into R (and that there is no unwanted overhead when accessing them).

  `as(from, "CompressedIRangesList")`: Coerces `from`, to a `CompressedIRangesList`, requiring that all `IntegerRanges` elements are coerced to internal `IRanges` elements. This is a convenient way to ensure that all `IntegerRanges` have been imported into R (and that there is no unwanted overhead when accessing them).

  `as(from, "SimpleNormalIRangesList")`: Coerces `from`, to a `SimpleNormalIRangesList`, requiring that all `IntegerRanges` elements are coerced to internal `NormalIRanges` elements.

  `as(from, "CompressedNormalIRangesList")`: Coerces `from`, to a `CompressedNormalIRangesList`, requiring that all `IntegerRanges` elements are coerced to internal `NormalIRanges` elements.

In the code snippet below, `x` is an `IRangesList` object.

  `unlist(x)`: Unlists `x`, an `IRangesList`, by concatenating all of the ranges into a single `IRanges` instance. If the length of `x` is zero, an empty `IRanges` is returned.

### Methods for NormalIRangesList objects

  `max(x)`: An integer vector containing the maximum values of each of the elements of `x`.

  `min(x)`: An integer vector containing the minimum values of each of the elements of `x`.

### Author(s)

Michael Lawrence

### See Also

`IntegerRangesList`, the parent of this class, for more functionality.

intra-range-methods and inter-range-methods for intra and inter range transformations of IRangesList objects.

setops-methods for set operations on IRangesList objects.

### Examples

    range1 <- IRanges(start=c(1,2,3), end=c(5,2,8))
    range2 <- IRanges(start=c(15,45,20,1), end=c(15,100,80,5))
    named <- IRangesList(one = range1, two = range2)
    length(named) # 2
    names(named) # "one" and "two"
    named[[1]] # range1
    unnamed <- IRangesList(range1, range2)
    names(unnamed) # NULL

    x <- IRangesList(start=list(c(1,2,3), c(15,45,20,1)),
                     end=list(c(5,2,8), c(15,100,80,5)))
    as.list(x)

[Package IRanges version 2.14.12 Index]