Package: IRanges
Title: Infrastructure for manipulating intervals on sequences
Description: Provides efficient low-level and highly reusable S4
	classes for storing, manipulating and aggregating over annotated
	ranges of integers. Implements an algebra of range operations,
	including efficient algorithms for finding overlaps and nearest
	neighbors. Defines efficient list-like classes for storing,
	transforming and aggregating large grouped data, i.e., collections
	of atomic vectors and DataFrames.
Version: 2.14.12
Encoding: UTF-8
Author: H. Pagès, P. Aboyoun and M. Lawrence
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
biocViews: Infrastructure, DataRepresentation
Depends: R (>= 3.1.0), methods, utils, stats, BiocGenerics (>= 0.25.3),
        S4Vectors (>= 0.18.2)
Imports: stats4
LinkingTo: S4Vectors
Suggests: XVector, GenomicRanges, Rsamtools, GenomicAlignments,
        GenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset,
        RUnit, BiocStyle
License: Artistic-2.0
Collate: range-squeezers.R Vector-class-leftovers.R
        List-class-leftovers.R DataFrame-utils.R DataFrameList-class.R
        DataFrameList-utils.R AtomicList-class.R AtomicList-utils.R
        Ranges-and-RangesList-classes.R IPosRanges-class.R
        IPosRanges-comparison.R IntegerRangesList-class.R
        IRanges-class.R IRanges-constructor.R IRanges-utils.R
        Rle-class-leftovers.R IPos-class.R subsetting-utils.R
        Grouping-class.R Views-class.R RleViews-class.R
        RleViews-utils.R extractList.R seqapply.R multisplit.R
        SimpleGrouping-class.R IRangesList-class.R IPosList-class.R
        ViewsList-class.R RleViewsList-class.R RleViewsList-utils.R
        RangedSelection-class.R MaskCollection-class.R read.Mask.R
        CompressedList-class.R CompressedList-comparison.R
        CompressedHitsList-class.R CompressedDataFrameList-class.R
        CompressedAtomicList-class.R CompressedGrouping-class.R
        CompressedRangesList-class.R RangedData-class.R
        RangedData-utils.R Hits-class-leftovers.R NCList-class.R
        findOverlaps-methods.R windows-methods.R intra-range-methods.R
        inter-range-methods.R reverse-methods.R coverage-methods.R
        cvg-methods.R slice-methods.R setops-methods.R
        nearest-methods.R cbind-Rle-methods.R tile-methods.R
        extractListFragments.R zzz.R
git_url: https://git.bioconductor.org/packages/IRanges
git_branch: RELEASE_3_7
git_last_commit: 00af027
git_last_commit_date: 2018-09-19
Date/Publication: 2018-09-20
NeedsCompilation: yes
Packaged: 2018-09-21 00:37:50 UTC; biocbuild
Built: R 3.5.1; i386-w64-mingw32; 2018-09-21 10:33:00 UTC; windows
Archs: i386, x64
