INSPEcT_diffsteady-class {INSPEcT} | R Documentation

## An S4 class to represent comparisons between two steady-state conditions

### Description

INSPEcT_diffsteady is a class able to store the results of the comparisons between two steady states. An object of class INSPEcT_diffsteady is created with the method "compareSteady" applied on two "INSPEcT" objects (see `compareSteady`).

### Usage

    synthesis(object)

    processing(object)

    degradation(object)

    ## S4 method for signature 'INSPEcT_diffsteady'
    show(object)

    ## S4 method for signature 'INSPEcT_diffsteady'
    synthesis(object)

    ## S4 method for signature 'INSPEcT_diffsteady'
    processing(object)

    ## S4 method for signature 'INSPEcT_diffsteady'
    degradation(object)

### Arguments

`object` | An object of class INSPEcT_model

### Details

Methods associated to the class INSPEcT_diffsteady are:

- synthesis: Accessor to the synthesis rates and their comparisons.

- degradation: Accessor to the degradation rates and their comparisons.

- processing: Accessor to the processing rates and their comparisons.

- plotMA: visualization fuction for rates comparisons, see `plotMA`

### Value

Method show for objects of class INSPEcT_model returns the number of the genes that have been modeled

### Slots

`synthesis`

  A data.frame which contains both input data and comparisons results regarding synthesis rates

`degradation`

  A data.frame which contains both input data and comparisons results regarding degradation rates

`processing`

  A data.frame which contains both input data and comparisons results regarding processing rates

### Examples

    data('simData3rep', package='INSPEcT')
    data('simData3rep_2', package='INSPEcT')
    diffrates <- compareSteady(simData3rep, simData3rep_2)
    head(synthesis(diffrates))
    head(processing(diffrates))
    head(degradation(diffrates))

[Package INSPEcT version 1.10.0 Index]