ratesFirstGuessVar {INSPEcT} | R Documentation

## Retrieve pre-modeling rates and concentrations variance

### Description

Retrieve pre-modeling rates and concentrations variance

This method allow to access to the estimated variance of synthesis rates and pre mRNA and total mRNA concentrations the way they were calculated by the constructor function `newINSPEcT`.

### Usage

    ratesFirstGuessVar(object, feature)

    ## S4 method for signature 'INSPEcT'
    ratesFirstGuessVar(object, feature)

### Arguments

`object` | An object of class INSPEcT
`feature` | A character indicating the feature to retireve, "synthesis", "degradation", "processing" for rates, "total" for total mRNA concentrations or "preMRNA" for premature mRNA concentrations

### Value

A numeric vector containing the values for the selected feature

### See Also

`newINSPEcT`, `ratesFirstGuess`

### Examples

    data('rpkms', package='INSPEcT')
    tpts <- c(0, 1/6, 1/3, 1/2, 1, 2, 4, 8, 16)
    tL <- 1/6
    mycerIds <- newINSPEcT(tpts, tL, rpkms$foursu_exons, rpkms$total_exons,
    	rpkms$foursu_introns, rpkms$total_introns, BPPARAM=SerialParam())
    ratesFirstGuessVar(mycerIds, 'synthesis')

[Package INSPEcT version 1.10.0 Index]