ratesFirstGuess {INSPEcT} | R Documentation

## Retrieve pre-modeling rates and concentrations

### Description

Retrieve pre-modeling rates and concentrations

This method allow to access to the estimated synthesis, degradation, processing rates and pre mRNA and total mRNA concentrations the way they were calculated by the constructor function `newINSPEcT`.

### Usage

    ratesFirstGuess(object, feature)

    ## S4 method for signature 'INSPEcT'
    ratesFirstGuess(object, feature)

### Arguments

`object` | An object of class INSPEcT
`feature` | A character indicating the feature to retireve, "synthesis", "degradation", "processing" for rates, "total" for total mRNA concentrations or "preMRNA" for premature mRNA concentrations

### Value

A numeric matrix containing the values for the selected feature

### See Also

`newINSPEcT`, `ratesFirstGuessVar`

### Examples

    data('rpkms', package='INSPEcT')
    tpts <- c(0, 1/6, 1/3, 1/2, 1, 2, 4, 8, 16)
    tL <- 1/6
    mycerIds <- newINSPEcT(tpts, tL, rpkms$foursu_exons, rpkms$total_exons,
    	rpkms$foursu_introns, rpkms$total_introns, BPPARAM=SerialParam())
    # get estimated synthesis rates
    ratesFirstGuess(mycerIds, 'synthesis')

[Package INSPEcT version 1.10.0 Index]