sfPlot {INSPEcT} | R Documentation

## A nice plot to see scaling factors used for RNA-seq and 4sU-seq libraries

### Description

A nice plot to see scaling factors used for RNA-seq and 4sU-seq libraries

This method generates a plot that immediately shows the scaling factors used to scale RNA- and 4sU-seq libraries and the possible relations between them. The ratio between the RNA- and the 4sU-seq scaling can be in fact considered as a yield of the synthesis within the cells.

### Usage

    sfPlot(object)

    ## S4 method for signature 'INSPEcT'
    sfPlot(object)

### Arguments

`object` | An object of class INSPEcT

### Value

None

### Examples

    data('rpkms', package='INSPEcT')
    tpts <- c(0, 1/6, 1/3, 1/2, 1, 2, 4, 8, 16)
    tL <- 1/6
    mycerIds <- newINSPEcT(tpts, tL, rpkms$foursu_exons, rpkms$total_exons,
    	rpkms$foursu_introns, rpkms$total_introns, BPPARAM=SerialParam())
    sfPlot(mycerIds)

[Package INSPEcT version 1.10.0 Index]