compareSteady {INSPEcT} | R Documentation

## Generate an object of class INSPEcT_diffsteady from two objects of class INSPEcT

### Description

Generate an object of class INSPEcT_diffsteady from two objects of class INSPEcT

This method compares two object of class INSPEcT in order to identify differential usage of synthesis, processing or degradation rates in two different steady-state conditions. The two INSPEcT objects must have been profiled with replicates in order to provide a statistical significance to the differences between their rates.

### Usage

    compareSteady(inspectIds1, inspectIds2)

    ## S4 method for signature 'INSPEcT,INSPEcT'
    compareSteady(inspectIds1, inspectIds2)

### Arguments

`inspectIds1` | An object of calss INSPEcT
`inspectIds2` | A second object of calss INSPEcT

### Value

An object of class INSPEcT_diffsteady which contains both the absolute quantification of the rates as well as the comparison with the statistcal significance associated for each gene and rate. (See `INSPEcT_diffsteady-class`)

### Examples

    ## load data
    data('simRates', package='INSPEcT')
    data('simData3rep', package='INSPEcT')
    ## generate a new data set with 3 replicate to make the comparison
    newTpts <- c(0, 1/6)
    simData3rep_2 <- makeSimDataset(simRates, newTpts, 3, seed=2)
    ## compare
    diffrates <- compareSteady(simData3rep, simData3rep_2)
    ## visualize results
    diffrates

[Package INSPEcT version 1.10.0 Index]