hlaAttrBagObj {HIBAG} | R Documentation

## The class of HIBAG object

### Description

The class of a HIBAG object, which can be saved in the `.RData` file.

### Value

A list of:

`n.samp` | the total number of training samples
`n.snp` | the total number of candidate SNP predictors
`sample.id` | the sample IDs
`snp.id` | the SNP IDs
`snp.position` | SNP position in basepair
`snp.allele` | a vector of characters with the format of “A allele/B allele”
`snp.allele.freq` | the allele frequencies
`hla.locus` | the name of HLA locus
`hla.allele` | the HLA alleles used in the model
`hla.freq` | the HLA allele frequencies
`assembly` | the human genome reference, such like "hg19"
`classifiers` | a list of all classifiers (described as follows)
`matching` | matching proportion in the training set
`appendix` | `platform` – supported platform(s); `information` – other information, like training sets, authors; `warning` – any warning message

`classifiers` has the following components:

`samp.num` | the number of copies of samples in a bootstrap sample
`haplos` | a data.frame of haplotype frequencies
`` | `freq` – haplotype frequency
`` | `hla` – a HLA allele
`` | `haplo` – a SNP haplotype, with an entry value 0 standing for B (ZERO A allele), 1 for A (ONE A allele)
`snpidx` | the SNP indices used in this classifier
`outofbag.acc` | the out-of-bag accuracy of this classifier

### Author(s)

Xiuwen Zheng

### See Also

`hlaAttrBagging`, `hlaParallelAttrBagging`, `hlaModelToObj`, `hlaModelFiles`, `hlaAttrBagClass`

[Package HIBAG version 1.16.0 Index]