hlaAlleleSubset {HIBAG} | R Documentation

## Get a subset of HLA/KIR types

### Description

Get a subset of HLA/KIR types from an object of `hlaAlleleClass`.

### Usage

    hlaAlleleSubset(hla, samp.sel=NULL)

### Arguments

`hla` | an object of `hlaAlleleClass`
`samp.sel` | a logical vector, or an integer vector of indices

### Value

Return `hlaAlleleClass`.

### Author(s)

Xiuwen Zheng

### See Also

`hlaAllele`, `hlaAlleleDigit`

### Examples

    head(HLA_Type_Table)
    dim(HLA_Type_Table)  # 60 13

    # make a "hlaAlleleClass" object
    hla.id <- "A"
    hla <- hlaAllele(HLA_Type_Table$sample.id,
        H1 = HLA_Type_Table[, paste(hla.id, ".1", sep="")],
        H2 = HLA_Type_Table[, paste(hla.id, ".2", sep="")],
        locus=hla.id, assembly="hg19")
    summary(hla)

    subhla <- hlaAlleleSubset(hla, 1:100)
    summary(subhla)

[Package HIBAG version 1.16.0 Index]