# Generated by roxygen2: do not edit by hand

export(GenoGAMDataSet)
export(GenomicTiles)
export(callPeaks)
export(changeSettings)
export(checkSettings)
export(computeRegionSignificance)
export(computeSignificance)
export(computeSizeFactors)
export(dataRange)
export(filterData)
export(genogam)
export(getChromosomes)
export(getChunkIndex)
export(getChunkSize)
export(getCoordinates)
export(getFits)
export(getIndex)
export(getIndexCoordinates)
export(getOverhangSize)
export(getTile)
export(getTileNumber)
export(getTileSize)
export(makeTestGenoGAM)
export(makeTestGenoGAMDataSet)
export(makeTestGenomicTiles)
export(plot.GenoGAM)
export(qualityCheck)
export(tileSettings)
export(untile)
export(view)
export(writeToBEDFile)
exportClasses(GenoGAM)
exportClasses(GenoGAMDataSet)
exportClasses(GenomicTiles)
exportMethods("design<-")
exportMethods("sizeFactors<-")
exportMethods(changeSettings)
exportMethods(checkSettings)
exportMethods(colData)
exportMethods(dataRange)
exportMethods(design)
exportMethods(getChromosomes)
exportMethods(getChunkIndex)
exportMethods(getChunkSize)
exportMethods(getCoordinates)
exportMethods(getFits)
exportMethods(getIndex)
exportMethods(getIndexCoordinates)
exportMethods(getOverhangSize)
exportMethods(getTile)
exportMethods(getTileNumber)
exportMethods(getTileSize)
exportMethods(rowRanges)
exportMethods(sizeFactors)
exportMethods(tileSettings)
exportMethods(untile)
exportMethods(view)
import(BiocParallel)
import(Biostrings)
import(DESeq2)
import(GenomeInfoDb)
import(GenomicAlignments)
import(GenomicRanges)
import(IRanges)
import(Rsamtools)
import(S4Vectors)
import(SummarizedExperiment)
import(methods)
import(mgcv)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,rbindlist)
importFrom(data.table,setnames)
importFrom(futile.logger,flog.error)
importFrom(futile.logger,flog.info)
importFrom(futile.logger,flog.warn)
importFrom(reshape2,melt)
