subsetByOverlaps,GenomicTiles,GRanges-method {GenoGAM}R Documentation

Subset by overlaps method for GenomciTiles

Description

Subsetting the GenomicTiles by a GRanges object

Usage

## S4 method for signature 'GenomicTiles,GRanges'
subsetByOverlaps(x, ranges, maxgap = -1L,
  minoverlap = 0L, type = c("any", "start", "end", "within", "equal"), ...)

Arguments

x

A GenomicTiles object.

ranges

A GRanges object

maxgap, minoverlap, type

See ?findOverlaps in the IRanges package for a description of these arguments.

...

Additional parameters

Value

A subsetted GenomicTiles object.

Author(s)

Georg Stricker georg.stricker@in.tum.de

Examples

gt <- makeTestGenomicTiles()
gr <- GRanges(c("chrI", "chrII"), IRanges(c(1, 120), c(40, 150)))
res <- subsetByOverlaps(gt, gr)
[Package GenoGAM version 1.8.0 Index]