subsetByOverlaps,GenoGAMDataSet,GRanges-method {GenoGAM}R Documentation

Subset by overlaps method for GenoGAMDataSet

Description

Subsetting the GenoGAMDataSet by a GRanges object

Usage

## S4 method for signature 'GenoGAMDataSet,GRanges'
subsetByOverlaps(x, ranges,
  maxgap = -1L, minoverlap = 0L, type = c("any", "start", "end", "within",
  "equal"), ...)

Arguments

x

A GenoGAMDataSet object.

ranges

A GRanges object

maxgap, minoverlap, type

See ?findOverlaps in the IRanges package for a description of these arguments.

...

Additional parameters

Value

A subsetted GenoGAMDataSet object.

Author(s)

Georg Stricker georg.stricker@in.tum.de

Examples

ggd <- makeTestGenoGAMDataSet()
gr <- GRanges("chrI", IRanges(1,50))
res <- subsetByOverlaps(ggd, gr)
[Package GenoGAM version 1.8.0 Index]