Summary,GenomicTiles-method {GenoGAM} | R Documentation

## Computing metrics

### Description

Computing metrics on each tile of the `GenomicTiles` object. So far all metrics from the Summary generics group, as well as mean, var, sd, median, mad and IQR are supported.

### Usage

    ## S4 method for signature 'GenomicTiles'
    Summary(x, ..., na.rm = FALSE)

    ## S4 method for signature 'GenomicTiles'
    mean(x)

    ## S4 method for signature 'GenomicTiles,ANY'
    var(x)

    ## S4 method for signature 'GenomicTiles'
    sd(x)

    ## S4 method for signature 'GenomicTiles'
    median(x)

    ## S4 method for signature 'GenomicTiles'
    mad(x)

    ## S4 method for signature 'GenomicTiles'
    IQR(x)

### Arguments

`x` | A `GenomicTiles` object
`...` | Additional arguments
`na.rm` | Should NAs be dropped. Otherwise the result is NA

### Value

A list of as many elements as there are assays. Each element contains of a matrix with the specified metric computed per tile per column of the assay data.

### Author(s)

Georg Stricker georg.stricker@in.tum.de

### Examples

    gt <- makeTestGenomicTiles()
    sum(gt)
    min(gt)
    max(gt)
    mean(gt)
    var(gt)
    sd(gt)
    median(gt)
    mad(gt)
    IQR(gt)

[Package GenoGAM version 1.8.0 Index]