qualityCheck {GenoGAM} | R Documentation

## A function to quality check the data

### Description

This function checks some data attributes in the given class. Check details for more information.

### Usage

    qualityCheck(object, ...)

### Arguments

`object` | Any object for which this methods is implemented
`...` | further parameters. See details.

### Details

So far this method is only implemented for the class `GenoGAMDataSet`. In this case some general metrics are printed and some plots are stored in the folder "qc", which will be created in the working directory.

Additional parameters: factorGroups (for GenoGAMDataSet), which is used to specify factor groups for normalization plots. By default the groups will be identified automatically. See ?computeSizeFactors for parameter description.

### Value

Based on the object provided, see details.

### Author(s)

Georg Stricker georg.stricker@in.tum.de

[Package GenoGAM version 1.8.0 Index]