GeneOverlap-package	GeneOverlap-package
drawHeatmap	drawHeatmap
drawHeatmap,GeneOverlapMatrix-method	drawHeatmap
GeneOverlap-class	GeneOverlap
GeneOverlapMatrix-class	GeneOverlapMatrix
getContbl	getReadonly
getContbl,GeneOverlap-method	getReadonly
getGenomeSize	getGenomeSize
getGenomeSize,GeneOverlap-method	getGenomeSize
getGsetA	getReadonlyMatrix
getGsetA,GeneOverlapMatrix-method	getReadonlyMatrix
getGsetB	getReadonlyMatrix
getGsetB,GeneOverlapMatrix-method	getReadonlyMatrix
getIntersection	getReadonly
getIntersection,GeneOverlap-method	getReadonly
getJaccard	getReadonly
getJaccard,GeneOverlap-method	getReadonly
getListA	getList
getListA,GeneOverlap-method	getList
getListB	getList
getListB,GeneOverlap-method	getList
getMatrix	getReadonlyMatrix
getMatrix,GeneOverlapMatrix-method	getReadonlyMatrix
getNestedList	getReadonlyMatrix
getNestedList,GeneOverlapMatrix-method	getReadonlyMatrix
getOddsRatio	getReadonly
getOddsRatio,GeneOverlap-method	getReadonly
getPval	getReadonly
getPval,GeneOverlap-method	getReadonly
getSelfCompare	getReadonlyMatrix
getSelfCompare,GeneOverlapMatrix-method	getReadonlyMatrix
getTested	getReadonly
getTested,GeneOverlap-method	getReadonly
getUnion	getReadonly
getUnion,GeneOverlap-method	getReadonly
gs.RNASeq	gs.RNASeq
hESC.ChIPSeq.list	hESC.ChIPSeq.list
hESC.RNASeq.list	hESC.RNASeq.list
newGeneOverlap	newGeneOverlap
newGOM	newGOM
print,GeneOverlap-method	GeneOverlap
print,GeneOverlapMatrix-method	GeneOverlapMatrix
setGenomeSize<-	getGenomeSize
setGenomeSize<-,GeneOverlap-method	getGenomeSize
setListA<-	getList
setListA<-,GeneOverlap-method	getList
setListB<-	getList
setListB<-,GeneOverlap-method	getList
show,GeneOverlap-method	GeneOverlap
show,GeneOverlapMatrix-method	GeneOverlapMatrix
testGeneOverlap	testGeneOverlap
testGeneOverlap,GeneOverlap-method	testGeneOverlap
[	getReadonlyMatrix
[,GeneOverlapMatrix-method	getReadonlyMatrix
