Package: GeneGeneInteR
Type: Package
Title: Tools for Testing Gene-Gene Interaction at the Gene Level
Version: 1.6.0
Author: Mathieu Emily, Nicolas Sounac, Florian Kroell, Magalie Houee-Bigot
Maintainer: Mathieu Emily <mathieu.emily@agrocampus-ouest.fr>, Magalie Houee-Bigot <magalie.houee@agrocampus-ouest.fr>
Description: The aim of this package is to propose several methods for testing gene-gene interaction in case-control association studies. Such a test can be done by aggregating SNP-SNP interaction tests performed at the SNP level (SSI) or by using gene-gene multidimensionnal methods (GGI) methods. The package also proposes tools for a graphic display of the results.
License: GPL (>= 2)
LazyData: TRUE
Depends: R (>= 3.3)
biocViews: GenomeWideAssociation, SNP, Genetics, GeneticVariability
Imports: snpStats, mvtnorm, GGtools, Rsamtools, igraph, kernlab,
        FactoMineR, plspm, IRanges, GenomicRanges,
        data.table,rioja,grDevices, graphics,stats,utils
NeedsCompilation: no
Packaged: 2018-05-01 03:38:08 UTC; biocbuild
Built: R 3.5.0; ; 2018-05-01 12:04:27 UTC; windows
