CCA.test                CCA (Canonical-Correlation Analysis) based GGI
                        analysis.
CLD.test                CLD (Composite Linkage Desequilibrium) based
                        GGI analysis.
GBIGM.test              GBIGM (Gene-based information gain method) for
                        GGI analysis.
GGI                     Gene-Gene Interaction Analysis of a set of
                        genes
KCCA.test               KCCA (Kernel Canonical-Correlation Analysis)
                        based GGI analysis.
PCA.test                PCA-based Gene-Gene Interaction analysis.
PLSPM.test              PLSPM (Partial Least Squares Path Modelling
                        Analysis) based Gene-Gene Interaction analysis.
data.SNP                Multiple genes dataset
gates.test              Gene-based Gene-Gene Interaction analysis by
                        combining SNP-SNP interaction tests
gene.pair               A case-control dataset with two genes
importFile              Imports SNPs information from pedfile, PLINK,
                        VCF (4.0) file, or genotypes imputed by
                        IMPUTE2.
imputeSnpMatrix         Missing values handling for SnpMatrix object
minP.test               Gene-based Gene-Gene Interaction analysis by
                        combining SNP-SNP interaction tests
plot.GGInetwork         Plot a Gene-Gene Interaction Study with an
                        heatmap-like visualization
print.GGItest           Printing objects of class '"GGItest"'
selectSnps              Selects SNPs in snpMatrix and associated info
                        data.frame, outputs of importFile.
snpMatrixScour          SNP filtering based on Minor Allele Frequency,
                        Hardy-Weinberg Equilibrium and call rate
summary.GGInetwork      Printing summaries class '"GGInetwork"' objects
summary.GGItest         Printing summaries class '"GGItest"' objects
tProd.test              Gene-based Gene-Gene Interaction analysis by
                        combining SNP-SNP interaction tests
tTS.test                Gene-based Gene-Gene Interaction analysis by
                        combining SNP-SNP interaction tests
