gene.pair {GeneGeneInteR} | R Documentation

## A case-control dataset with two genes

### Description

A case-control dataset containing the genotypes of 8 SNPs within GC gene (object `G1`) and 4 SNPs within PADI2 gene (object `G2`). The dataset includes 247 individuals affected by Rheumatoid Arthritis (RA) and 202 individuals not affected by RA.

### Usage

    data(gene.pair)

### Format

A list with 3 objects:

Y

  A `factor` of disease status with two levels: `HealthControl` or `RheumatoidArthritis`.

G1

  A SnpMatrix object with 8 SNPs.

G2

  A SnpMatrix object with 4 SNPs.

### Value

A dataset containing the genotypes of 8 SNPs within GC gene (object `G1`) and 4 SNPs within PADI2 gene (object `G2`).

### Source

All three objects were taken from NCBI web site and are part of the GSE39428 series Chang X., et al. Investigating a pathogenic role for TXNDC5 in tumors. Int. J. Oncol., 43(6): 1871-84, 2013.

[Package GeneGeneInteR version 1.6.0 Index]