bpGenes,CopyNumberBreakPointGenes-method {GeneBreak} | R Documentation

## bpGenes

### Description

Indentifies genes affected by breakpoint locations.

### Usage

    ## S4 method for signature 'CopyNumberBreakPointGenes'
    bpGenes(object)

### Arguments

`object` | An object of class CopyNumberBreakPointGenes

### Details

This step requires feature-to-gene annotations added to the input object (see `?addGeneAnnotation`).

### Value

Returns an object of class CopyNumberBreakPointGenes with gene-breakpoint information

### Examples

    data( copynumber.data.chr20 )
    data( ens.gene.ann.hg18 )

    bp <- getBreakpoints( copynumber.data.chr20 )
    bp <- bpFilter( bp )
    bp <- addGeneAnnotation( bp, ens.gene.ann.hg18 )
    bp <- bpGenes( bp )

    ## options to inspect the data
    bp
    accessOptions( bp )

[Package GeneBreak version 1.10.0 Index]