MutationAnnotationFormat_v2.2-class {GenVisR} | R Documentation

## Class MutationAnnotationFormat_v2.2

### Description

An S4 class to represent data in mutation annotation format version 2.2, inherits from the MutationAnnotationFormat_Virtual class.

### Usage

    MutationAnnotationFormat_v2.2(mafData)

### Arguments

`mafData` | data.table object containing a maf file conforming to the version 2.2 specification.

### Slots

`position`

  data.table object containing column names "Chromosome", "Start_Position", "End_Position, "Strand".

`mutation`

  data.table object containing column names "Variant_Classification", "Variant_Type", "Reference_Allele", "Tumor_Seq_Allele1", "Tumor_Seq_Allele2".

`sample`

  data.table object containing columns names "Tumor_Sample_Barcode".

`meta`

  data.table object containing meta data.

[Package GenVisR version 1.12.1 Index]