Rainfall-class {GenVisR} | R Documentation

## Class Rainfall

### Description

An S4 class for the Rainfall plot object, under development!!!

### Usage

    Rainfall(object, BSgenome = NULL, palette = NULL, sectionHeights = NULL,
      chromosomes = NULL, sample = NULL, pointSize = NULL, verbose = FALSE,
      plotALayers = NULL, plotBLayers = NULL)

### Arguments

`object` | Object of class MutationAnnotationFormat, GMS, VEP.
`BSgenome` | Object of class BSgenome to extract genome wide chromosome coordinates
`palette` | Character vector specifying colors used for encoding transitions and transversions , should be of length 7. If NULL a default palette will be used.
`sectionHeights` | Numeric vector specifying relative heights of each plot section, should sum to one. Expects a value for each section.
`chromosomes` | Character vector specifying chromosomes for which to plot
`sample` | Character vector specifying the samples for which to plot.
`pointSize` | numeric value giving the size of points to plot (defaults to 2)
`verbose` | Boolean specifying if status messages should be reported.
`plotALayers` | list of ggplot2 layers to be passed to the rainfall plot.
`plotBLayers` | list of ggplot2 layers to be passed to the density plot.

### Slots

`PlotA`

  gtable object for the rainfall plot

`PlotB`

  gtable object for density plots based on the rainfall plot

`Grob`

  gtable object for the arranged plot

`primaryData`

  data.table object storing the primary data used for plotting.

[Package GenVisR version 1.12.1 Index]