VEP_v88-class {GenVisR} | R Documentation

## Class VEP_v88

### Description

An S4 class to represent data in variant effect predictor version 88 format, inherits from the VEP_Virtual class, under development!!!

### Usage

    VEP_v88(vepData, vepHeader)

### Arguments

`vepData` | data.table object containing a VEP annotation file conforming to the version 88 specifications.
`vepHeader` | Object of class list containing character vectors for vep header information.

### Slots

`header`

  data.table object containing header information

`description`

  data.table object containing column descriptions

`position`

  data.table object containing column names "chromosome_name", "start", "stop".

`mutation`

  data.table object containing column names "reference", "variant", "trv_type".

`sample`

  data.table object containing columns names "sample".

`meta`

  data.table object containing meta data.

[Package GenVisR version 1.12.1 Index]