filtered {GOTHiC} | R Documentation

## A GenomicRangesList object used as an example in the GOTHiC package

### Description

`filtered` is a GenomicRangesList example object used as an example for the binomialHiC package. This GenomicRangesList contains reads from a human lymphoblastoid cell line HiC experiment (Lieberman-Aiden et al. 2009) for chr20, that were mapped to the genome, paired and PCR duplicate-filtered.

### Usage

    data(lymphoid_chr20_paired_filtered)

### Format

The format is: GenomicRangesList with 2 slots: $paired_reads_1 contains the coordinates for one end of the paired reads $paired_reads_2 contains the coordinates for the other end of the paired reads

### Author(s)

Borbala Gerle and Robert Sugar

### See Also

`mapReadsToRestrictionSites`

### Examples

    data(lymphoid_chr20_paired_filtered)

[Package GOTHiC version 1.16.0 Index]