0f13879758690de13e08cdbbb64322d7 *CITATION
c0d6019947bfd6bfa526522ce5d2a9de *DESCRIPTION
757d3fc601278b9f0538f35b5eb1c5cc *INDEX
44ce959b53f37a5342582b14e6a05d67 *Meta/Rd.rds
55ac444414ac39e8d3b39997698d40aa *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
c463dfe75e2c2344854b6a1691e94359 *Meta/hsearch.rds
6b28b5f5bce1c5ca0f347b54a67f1de6 *Meta/links.rds
f49df0d86a477c9d7b5d7906e266ba67 *Meta/nsInfo.rds
335ef95a00944d99d1b4af416514fcfe *Meta/package.rds
79906019f193e479b53cd871bc038d10 *Meta/vignette.rds
72ee1921276696de34d6c12e559f07d4 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/FourCSeq
8f34b1e5230a80e2ec8282d8f5602040 *R/FourCSeq.rdb
ca04f2be8902ffa419bb90d9dfffcda1 *R/FourCSeq.rdx
e712884310e3ae0225ae27d9b4125f3d *data/datalist
0789fe12ab99c865a0bbfad6109dd70a *data/fc.rda
16ca8c7048b6cc6872ef0b622068a9bc *data/fcf.rda
2417ac37a22bc1cc547d5b39566dd8ba *doc/FourCSeq.R
d88c442490157761fcb294bb0f108775 *doc/FourCSeq.Rnw
56d51ce76af44f7158fa7afddc3eb205 *doc/FourCSeq.pdf
988ed573102103c3c8a6351953ffddaa *doc/index.html
a47189afb85d952ce3f8c9029c5426ae *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam
e66069ad85339fc6d53c82fd15331b9e *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam.bai
71abbf35f0027ba4136a183be67105b3 *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam
b9ae7b5dd37a082cde997aeeecd30b8a *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam.bai
9995280b16d4dd17a2f6d469969d70bb *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam
0cc7e25225dcdea740c8eb34c00cdaee *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam.bai
fbe26ce19c28dabbf2e4091a1badd2d4 *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam
0d76977b2e36046cc176112776c5fa4e *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam.bai
d7271804926af64db2e5967c5dcd973b *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam
89cda3597b0911a9021eb51a8d5a5620 *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam.bai
26631755da6e4834f94337426858e559 *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam
36692e73c13be4c94e3c355b9a1a697b *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam.bai
255a24367518eb0f66ac409b42de54f3 *extdata/dm3_chr2L_1-6900.fa
22c667eddcaa6a93ba036d92d619b3d9 *extdata/primer.fa
52cdc74e647c9f0cd992a5b5c8e56263 *extdata/python/demultiplex.py
d3bca03dda0cf76445b40efb8a81d07f *help/AnIndex
cb8fffcf63c16dddb0135aacd58b3a9b *help/FourCSeq.rdb
a3017fd9695788ab511283a7ff430fbe *help/FourCSeq.rdx
d19da596083fc6882991ed24e2e2574d *help/aliases.rds
58cb772d0902da42f336a841fcb774e5 *help/paths.rds
9ea884adb9161d07c9231ddc9bd05404 *html/00Index.html
ac29a1a57c62f79e2ab7cd43f620f86f *html/FourC.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f32a007ea3c4c1f52a1081d72d5030d8 *html/addFragments.html
c4572daecb2c9a2cc2f9772e790bfd84 *html/addPeaks.html
13e3e59776ccaea89b11f247528c4309 *html/addViewpointFrags.html
78fc5893ee70f7add5275100568cfc09 *html/combineFragEnds.html
c0c378bf25a2ea052fe5b33ee546b281 *html/countFragmentOverlaps.html
7864c4c839fe2dd8764adedba3663cec *html/countFragmentOverlapsSecondCutter.html
3d69c66deff69a9656979cd36033f504 *html/distFitMonotone.html
18e5a6edb8872a6018995487ab1911e1 *html/distFitMonotoneSymmetric.html
ca4f879b4104f6339164c3d5873192a9 *html/fc.html
a1ca8da97524a4bbe4117e1c546c40f8 *html/fcf.html
6190bb8584e811283f1a2ff5b789ef7f *html/findViewpointFragments.html
3acec3436ca4991e208b750b04c7346b *html/getAllResults.html
b865aedb3f26cfbb89953d88e972b73e *html/getDifferences.html
07d21b98dcf433a5b3c43f8fa204431e *html/getDistAroundVp.html
a8557a1219e117710705b45dd56630b5 *html/getNormalizationFactors.html
9bf4a55f626ca3b713151b5d48228e60 *html/getReferenceSeq.html
2381615de24014b1dbe3f9085ef499d6 *html/getZScores.html
ab0d72ff1ae5ad048f0c1d70639d50a3 *html/normalizeRPM.html
2a594ade0f38798c13e83f30732da96f *html/plotDifferences.html
e9a9d9d34ca10ba18ee4add4b5495fab *html/plotFits.html
36705886e96185b6f837ba75eb4fe9cb *html/plotNormalizationFactors.html
22bbb70126e1e6db01a06432762495e8 *html/plotScatter.html
c2842aef9b6449eca097d73d7226a97f *html/plotZScores.html
640b3cea3968a50e85c2bcc3e22838da *html/smoothCounts.html
f3ed9fed3ad70f3c5e20ad19c86ef827 *html/smoothHitPerCent.html
dd2d5c70075732ba78f9f59a51e8994e *html/writeTrackFiles.html
