getCom {FELLA} | R Documentation

## Get community

### Description

Extractor function for all the nodes from a level/community of KEGG graph

### Usage

    getCom(data, level, format = "name")

### Arguments

`data` | FELLA.DATA object
`level` | Desired level, can be coded as a number or a character: 1 or "pathway"; 2 or "module"; 3 or "enzyme"; 4 or "reaction"; 5 or "compound".
`format` | Format of the output, "name" returns KEGG IDs whereas "id" returns vertices IDs

### Value

Vector of the names/ids of the desired KEGG graph community

### Examples

    ## This function is internal
    attach(environment(FELLA:::getCom))
    data(FELLA.sample)
    ## Pathways
    getCom(FELLA.sample, 1, format = "name")
    getCom(FELLA.sample, 1, format = "id")
    ## Modules
    getCom(FELLA.sample, 2)
    ## Enzymes
    head(getCom(FELLA.sample, 3))
    ## Reactions
    head(getCom(FELLA.sample, 4))
    ## Compounds
    head(getCom(FELLA.sample, 5))

[Package FELLA version 1.0.1 Index]