calculateEnrichement {ELMER} | R Documentation

## Calculate motif Erichment

### Description

Calculates fisher exact test

### Usage

    calculateEnrichement(foreground, background)

### Arguments

`foreground` | A nsparseMatrix object in each 1 means the motif is found in a region, 0 not.
`background` | A nsparseMatrix object in each 1 means the motif is found in a region, 0 not.

### Examples

    foreground <- Matrix::Matrix(sample(0:1,size = 100,replace = TRUE), nrow = 10, ncol = 10,sparse = TRUE)
    rownames(foreground) <- paste0("region",1:10)
    colnames(foreground) <- paste0("motif",1:10)
    background <- Matrix::Matrix(sample(0:1,size = 100,replace = TRUE), nrow = 10, ncol = 10,sparse = TRUE)
    rownames(background) <- paste0("region",1:10)
    colnames(background) <- paste0("motif",1:10)
    calculateEnrichement(foreground,background)

[Package ELMER version 2.4.4 Index]