Likefun {EBSeq} | R Documentation

## Likelihood Function of the NB-Beta Model

### Description

'Likefun' specifies the Likelihood Function of the NB-Beta Model.

### Usage

    Likefun(ParamPool, InputPool)

### Arguments

`ParamPool` | The parameters that will be estimated in EM.
`InputPool` | The control parameters that will not be estimated in EM.

### Value

The function will return the log-likelihood.

### Author(s)

Ning Leng

### References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

### Examples

    #x1 = c(.6,.7,.3)
    #Input = matrix(rnorm(100,100,1), ncol=10)
    #RIn = matrix(rnorm(100,200,1), ncol=10)
    #InputPool = list(Input[,1:5], Input[,6:10], Input,
    #	rep(.1,100), 1, RIn, RIn[,1:5], RIn[,6:10], 100)
    #Likefun(x1, InputPool)

[Package EBSeq version 1.20.0 Index]