f1 {EBSeq} | R Documentation

## The Prior Predictive Distribution of being DE

### Description

'f1' gives the Prior Predictive Distribution of DE.

### Usage

    f1(Input1, Input2, AlphaIn, BetaIn, EmpiricalRSP1,
    	EmpiricalRSP2, NumOfGroup, log)

### Arguments

`Input1` | Expressions from Condition1.
`Input2` | Expressions from Condition2.
`AlphaIn, BetaIn, EmpiricalRSP1, EmpiricalRSP2` | The parameters estimated from last iteration of EM.
`NumOfGroup` | How many transcripts within each Ng group.
`log` | If true, will give the log of the output.

### Value

The function will return the prior predictive distribution values of being DE.

### Author(s)

Ning Leng

### References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

### See Also

f0

### Examples

    #f1(matrix(rnorm(100,100,1),ncol=10),
    #	matrix(rnorm(100,100,1),ncol=10), .5, .6,
    #	matrix(rnorm(100,200,1),ncol=10),
    #	matrix(rnorm(100,200,1),ncol=10), 100, TRUE)

[Package EBSeq version 1.20.0 Index]