PlotPostVsRawFC {EBSeq} | R Documentation

## Plot Posterior FC vs FC

### Description

'PlotPostVsRawFC' helps the users visualize the posterior FC vs FC in a two condition study.

### Usage

    PlotPostVsRawFC(EBOut, FCOut)

### Arguments

`EBOut` | The output of EBMultiTest function.
`FCOut` | The output of PostFC function.

### Value

A figure shows fold change vs posterior fold change.

### Author(s)

Ning Leng

### References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

### See Also

PostFC

### Examples

    data(GeneMat)
    GeneMat.small = GeneMat[c(500:600),]
    Sizes = MedianNorm(GeneMat.small)
    EBOut = EBTest(Data = GeneMat.small,
    	Conditions = as.factor(rep(c("C1","C2"), each=5)),
    	sizeFactors = Sizes, maxround = 5)
    FC = PostFC(EBOut)
    PlotPostVsRawFC(EBOut,FC)

[Package EBSeq version 1.20.0 Index]