GetPPMat {EBSeq} | R Documentation

## Posterior Probability of Transcripts

### Description

'GetPPMat' generates the Posterior Probability of being each pattern of each transcript based on the EBTest output.

### Usage

    GetPPMat(EBout)

### Arguments

`EBout` | The output of EBTest function.

### Value

The poster probabilities of being EE (first column) and DE (second column).

### Author(s)

Ning Leng

### References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

### Examples

    data(GeneMat)
    GeneMat.small = GeneMat[c(500:550),]
    Sizes = MedianNorm(GeneMat.small)
    EBOut = EBTest(Data = GeneMat.small,
    	Conditions = as.factor(rep(c("C1","C2"), each=5)),
    	sizeFactors = Sizes, maxround = 5)
    PP = GetPPMat(EBOut)
    str(PP)
    head(PP)

[Package EBSeq version 1.20.0 Index]