Wt.phenomat {DTA} | R Documentation

## Design of the Saccharomyces Cerevisiae wild-type cDTA experiment from Sun et al.

### Description

The phenotype matrix `Wt.phenomat` contains information about the experimental design. It is comprised of the filename, the type of RNA fraction measured (T, U or L), the labeling time and the replicate number.

### Usage

    Wt.phenomat

### Format

The phenomat is a matrix comprised of the file name, the type of RNA fraction mesasured (T, U or L, `fraction` column), the labeling time (`time`,`timeframe` column) and the replicate number (`nr` column). Rows in this matrix represent the individual experiments.

### Source

M. Sun, B. Schwalb, D. Schulz, N. Pirkl, L. Lariviere, K. Maier, A. Tresch, P. Cramer. Mutual feedback between mRNA synthesis and degradation buffers transcript levels in a eukaryote. Under review.

[Package DTA version 2.26.0 Index]