mclusterSim {DOSE} | R Documentation

## mclusterSim

### Description

Pairwise semantic similarity for a list of gene clusters

### Usage

    mclusterSim(clusters, measure = "Wang", combine = "BMA")

### Arguments

`clusters` | A list of gene clusters
`measure` | one of "Wang", "Resnik", "Rel", "Jiang", and "Lin".
`combine` | One of "max", "avg", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein.

### Value

similarity matrix

### Author(s)

Yu Guangchuang

### Examples

    cluster1 <- c("835", "5261","241")
    cluster2 <- c("578","582")
    cluster3 <- c("307", "308", "317")
    clusters <- list(a=cluster1, b=cluster2, c=cluster3)
    mclusterSim(clusters, measure="Wang")

[Package DOSE version 3.6.1 Index]