GSEA_internal {DOSE} | R Documentation

## GSEA_internal

### Description

generic function for gene set enrichment analysis

### Usage

    GSEA_internal(geneList, exponent, nPerm, minGSSize, maxGSSize, pvalueCutoff,
      pAdjustMethod, verbose, seed = FALSE, USER_DATA, by = "fgsea")

### Arguments

`geneList` | order ranked geneList
`exponent` | weight of each step
`nPerm` | permutation numbers
`minGSSize` | minimal size of each geneSet for analyzing
`maxGSSize` | maximal size of each geneSet for analyzing
`pvalueCutoff` | p value Cutoff
`pAdjustMethod` | p value adjustment method
`verbose` | print message or not
`seed` | set seed inside the function to make result reproducible. FALSE by default.
`USER_DATA` | annotation data
`by` | one of 'fgsea' or 'DOSE'

### Value

gseaResult object

### Author(s)

Yu Guangchuang

[Package DOSE version 3.6.1 Index]