geneSim {DOSE} | R Documentation

## geneSim

### Description

measuring similarities bewteen two gene vectors.

### Usage

    geneSim(geneID1, geneID2 = NULL, measure = "Wang", combine = "BMA")

### Arguments

`geneID1` | entrez gene vector
`geneID2` | entrez gene vector
`measure` | one of "Wang", "Resnik", "Rel", "Jiang", and "Lin".
`combine` | One of "max", "avg", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein.

### Details

provide two entrez gene vectors, this function will calculate their similarity.

### Value

score matrix

### Author(s)

Guangchuang Yu http://ygc.name

[Package DOSE version 3.6.1 Index]