generic.trans.probs {DOQTL} | R Documentation

## Generic transition probabilities

### Description

Generic function to provide starting transition probabilities. Not ready for use in this version.

### Usage

      generic.trans.probs(states, snps, chr = c(1:19, "X"), sex = c("M", "F"))

### Arguments

`states` | Character vector containing the genotype states coded as letters.
`snps` | Data.frame containing the marker locations. SNP ID, chromosome, Mb anc cM locations in columns 1 through 4, respectively.
`chr` | Character containing the chromosome to use.
`sex` | Character that is either FALSE or M indicating the sex. Only used on x chromosome.

### Details

This function is a placeholder for a more sophisticated algorithm to be developed later. It is an effort to provide a set of starting transition probabilities for mapping populations other than the DO.

### Value

A matrix of transition probabilities between genotype states.

### Note

This function is still in development.

### Author(s)

Daniel Gatti

### See Also

`do.trans.probs`, `cc.trans.probs`

### Examples

      ## Not run:  generic.trans.probs(states, snps, chr = 1, sex = "M")

[Package DOQTL version 1.16.2 Index]