cluster.strains {DOQTL} | R Documentation

## cluster.strains

### Description

Given a set of numeric SNPs, cluster the strains based on allele sharing. This function hierarchically clusters the strains based on the proportion of SNPs that share alleles between each strain. Note: numeric snps, not character snps, are the input to this function.

### Usage

    cluster.strains(variants)

### Arguments

`variants` | data.frame, numeric variants as returned by `convert.variants.to.numeric`.

### Value

data.frame: of numeric variants with the strains clustered.

### Author(s)

Daniel Gatti

### See Also

`convert.variants.to.numeric`, `variant.plot`

### Examples

      data(example.snps)
      variants = convert.variants.to.numeric(variants = example.snps[1:100,])
      variants = cluster.strains(variants)

[Package DOQTL version 1.16.2 Index]