html.report {DOQTL} | R Documentation

## Create an HTML report for a set of QTL

### Description

Given a list of QTL objects, create a set of HTML pages summarizing the QTL.

### Usage

      html.report(path, qtl, perms, assoc = FALSE)

### Arguments

`path` | Character string with path to which to write.
`qtl` | List containing DOQTL objects as produced by `scanone`.
`perms` | Numeric vector containing permutation results for the phenotypes.
`assoc` | Boolean, if TRUE, look for corresponding *.Rdata files containing the names of the qtl in the current working directory and plot the association plots. If FALSE (default), do not plot association mapping analysis.

### Details

This function summarizes a set of QTL scans made using `scanone`. FALSEor each QTL in the qtl list, it creates an HTML page with a QTL plot and coefficient plots for the significant QTL. The permutations are used to assess significance. It then summarizes all of these in a table and creates a summary HTML page and a *.csv file with the QTL results.

### Value

No value is returned. HTML report of QTL is written out to the specified directory.

### Author(s)

Daniel Gatti

### Examples

       ## Not run:  html.report(path, qtl, perms, merge = FALSE)

[Package DOQTL version 1.16.2 Index]