add.missing.F1s {DOQTL} | R Documentation

## Add Missing F1 Samples

### Description

Given a set of CC or DO founders, impute the genotypes or intensities of missing F1s.

### Usage

      add.missing.F1s(founders, snps, sampletype = c("DO", "CC", "DOF1", "HS", "other"))

### Arguments

`founders` | List, required: Contains either an element called 'geno' or two elements called 'x' and 'y'.
`snps` | Data.frame, required: Data.frame containing the SNPs. SNP ID, chr, Mb and cM locations in columna 1 - 4, respectively.
`sampletype` | Character string, required: indicates the type of crss. One of "DO", "CC", "DOF1", "HS", "other".

### Value

List with the founders data structure updated to include missing F1 samples.

### Author(s)

Daniel Gatti

### Examples

      ## Not run:
        load(url("ftp://ftp.jax.org/MUGA/muga_snps.Rdata"))
        founders = add.missing.F1s(founders, snps = muga_snps)

    ## End(Not run)

[Package DOQTL version 1.16.2 Index]