genome.summary.plots {DOQTL} | R Documentation

## Genome summary plots

### Description

These plots show summaries of the founder haplotype proportions across SNPs or samples.

### Usage

      genotype.by.sample.barplot(results)
      genotype.by.snp.barplot(results, snps)

### Arguments

`results` | Data.frame as produced by `summarize.by.snps` or `summarize.by.samples`.
`snps` | Data.frame containing the marker locations. SNP ID, chromosome, Mb anc cM locations in columns 1 through 4, respectively.

### Details

Barplots across samples or SNPs are produced from the relevant summary files. This is intended to be run after DO genomes have been reconstructed for a large set of samples to verify that founder allele frequencies are consistent across SNPs and samples.

### Author(s)

Daniel Gatti

### See Also

`summarize.by.snps`, `summarize.by.samples`

### Examples

      ## Not run:
        load(url("ftp://ftp.jax.org/MUGA/muga_snps.Rdata"))
        results = summarize.by.samples(path = ".", snps = muga_snps)
        genotype.by.sample.barplot(results)

    ## End(Not run)

[Package DOQTL version 1.16.2 Index]