plot,graphGML,missing-method {CytoML} | R Documentation

## plot the population tree stored in graphGML.

### Description

The node with dotted order represents the population that has tailored gates (sample-specific gates) defined.

### Usage

    ## S4 method for signature 'graphGML,missing'
    plot(x, y = "missing", label = c("popName",
      "gateName"))

### Arguments

`x` | a graphNEL generated by constructTree function
`y` | not used
`label` | specifies what to be dispaled as node label. Can be either 'popName' (population name parsed from GateSets) or 'gateName'(the name of the actual gate associated with each node)

### Value

nothing

### Examples

    xmlfile <- system.file("extdata/cytotrol_tcell_cytobank.xml", package = "CytoML")
    g <- read.gatingML.cytobank(xmlfile)
    plot(g)

[Package CytoML version 1.6.5 Index]