4ad19164b71f48a159aee0245eee9ad2 *CITATION
ea793bd0aae54ae49e2aa05d1bac530e *DESCRIPTION
bdebbe6a515e01b9152333436324d824 *INDEX
3cd69232af62f6338e0f8f32dcfb2f6b *Meta/Rd.rds
15f3721576ea5ea2cfbe089d7dea1565 *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
da4840dea80304d9cff8525120f7ec1a *Meta/hsearch.rds
107b4f7f212774c0f20bacbc9cda5c8a *Meta/links.rds
dcd75ac66b3b8d934f8a6e38ae278e8e *Meta/nsInfo.rds
27892eb7fd410393d1712cc4c23c5f7b *Meta/package.rds
5b7095b70dee14c5a6bdf91db7980850 *Meta/vignette.rds
86c0b651bfa817b420bdda5df31a7ac4 *NAMESPACE
46f90b7212a37150f0709ef444b3cb68 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/CrispRVariants
a5fd61510713bc7786f7752b1ea818fd *R/CrispRVariants.rdb
3f8fd533b30ea022b27cf7ca9acbb22a *R/CrispRVariants.rdx
d8304ecffc1d260284eefbd1f356d045 *data/Rdata.rdb
e49739b1d47b2f9b373e1d6aeeb198b5 *data/Rdata.rds
f21c34fce0afb4ab5976a1b4209c33a5 *data/Rdata.rdx
80f8c2fbcf76e450958d2c32265b34fc *doc/index.html
c26bf75be321965449551d4dffa6de14 *doc/user_guide.R
030ad422de6cac5ecb1ef5c3ceaf6fc0 *doc/user_guide.Rmd
a98d613515f45080113ee516d8d0301c *doc/user_guide.pdf
65dcdf1d72c2cb6532b582faf9648242 *extdata/Danio_rerio.Zv9.73.gol.sqlite
3d09e19e1a84f4163a94c7ac41b4d7a1 *extdata/GRCz10_81_ptena_txdb.sqlite
cb32a40b50b777c9872e74844182b9cc *extdata/IM2033.ab1
31f41ba5b5f3ffe65a72638ac48d59ee *extdata/ab1/ptena/phenotype/embryo1/AB2001.ab1
87fbf13a52e1801266cb385c7919a4e9 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam
a5faefe3c25efbb5817f4235b9b7ce57 *extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam.bai
aa172362f53fb84dfc85ff43e8b58232 *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam
64f942fe93f6cb37549443b020be66bd *extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam.bai
dbfe81d150812e6f46063d6e3af8a7e9 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam
eee2ae352b4a9fedb9ceff871687b1a8 *extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam.bai
236be679c9bc2a2f812ff382455e885c *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam
eada6440c415bffc39581741c9d0a790 *extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam.bai
4a3d7a75593c3a87d833e05158e4f380 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam
c3644513e0f3ccf53022a838cac19fb1 *extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam.bai
a049fec3b3743cdbcab988593e07fe95 *extdata/bed/guide.bed
2d865f43e37fb89160b910b38bf2d5d6 *extdata/cntnap2b_test_data.fastq.gz
cf0e50eedb184b713c6f3d8a5d134b95 *extdata/cntnap2b_test_data_guide.bed
de83e1ebb8d157390a22a65d54f41f23 *extdata/cntnap2b_test_data_s.bam
f02d12f0ea6761b0eccc19df7a7a1b6c *extdata/gol_F1_clutch_1_embryo_1_s.bam
25956b49d20dd443e4ce9ca7e943796e *extdata/gol_F1_clutch_1_embryo_1_s.bam.bai
15010247fef191cf1d68d54cd20677da *extdata/gol_F1_clutch_1_embryo_2_s.bam
d0cdaeb0fda0197a6d62454d1c39b2ca *extdata/gol_F1_clutch_1_embryo_2_s.bam.bai
853c55081cbbc183fc46976430fa650e *extdata/gol_F1_clutch_1_embryo_3_s.bam
cc78c8e5d1d87f8571a6b71e1bd555ee *extdata/gol_F1_clutch_1_embryo_3_s.bam.bai
4cbc3ed5188a19125e6d50a27ff029e6 *extdata/gol_F1_clutch_1_embryo_4_s.bam
1ab0458554627ac4566378c536bc12a4 *extdata/gol_F1_clutch_1_embryo_4_s.bam.bai
9b27d523742d463169189d8c72060f7a *extdata/gol_F1_clutch_1_embryo_5_s.bam
6ef0cf85fe25ad4862a63f1aec0cf394 *extdata/gol_F1_clutch_1_embryo_5_s.bam.bai
411c8683cbd70b8d9cb9801ac5999b38 *extdata/gol_F1_clutch_1_embryo_6_s.bam
a1b074693d1b5052595a594e37b3ae96 *extdata/gol_F1_clutch_1_embryo_6_s.bam.bai
d677e388666d320a0dc80e187b4d30db *extdata/gol_F1_clutch_1_embryo_7_s.bam
f87f533910ac9896d9e4b797a885d18c *extdata/gol_F1_clutch_1_embryo_7_s.bam.bai
9e6c0eb2312197f90d0b2f352dda6b10 *extdata/gol_F1_clutch_1_embryo_8_s.bam
3a778946d9df16b7926f382258402dde *extdata/gol_F1_clutch_1_embryo_8_s.bam.bai
672eab0fa40051a31a81c9c174670eb8 *extdata/gol_F1_clutch_2_embryo_4_s.bam
1b157a9c4b418311efc6caabec3cfa38 *extdata/gol_F1_clutch_2_embryo_4_s.bam.bai
89b05c3e000a2e938ea38a1f90366ac2 *extdata/gol_F1_metadata.txt
01243899f4f39295d5efa23b382c3949 *extdata/gol_F1_metadata_small.txt
a8ef6a3063c96abb61e28f05667eb361 *extdata/metadata/metadata.xls
dcc5845212d1e1b64d1956793fb683f9 *extdata/ptena_GRCHz10_ref.rda
a569e6388cd16318dd2bad059cad710d *extdata/wtx_Sanger.png
af3584ce04196fafd561da7cd20608a7 *help/AnIndex
d98a5796ab42a9118287d8b49a8b860d *help/CrispRVariants.rdb
035afb73f02f89ecafd3199ef3fd10ba *help/CrispRVariants.rdx
4e198ddd052d9f8570d67f6ee96bf0f3 *help/aliases.rds
d52b7328fc2e120ee238946ae4d4f93d *help/paths.rds
2ec16512a04fcdace6cc9407127dd9a8 *html/00Index.html
d41140f1878e1b458ca4586382cca34d *html/CrisprRun-class.html
22c34cdc00ca20943b9e4da2489660ac *html/CrisprSet-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
fa77033b397eddb8bccdcefeba1c8069 *html/abifToFastq.html
847d9eefa30b7cb676b5375a5b684214 *html/addClipped.html
5f5376ebed50ebf3cdfeafdbea17a45f *html/addCodonFrame.html
2cc4bca3850a7856d9a06921f51674d2 *html/alleleLabelsHelpers.html
bc18bfeead8533fbebe57dec1168a0a6 *html/alleles.html
d4e6edf06b0dc3aecd397481f878ae50 *html/alns.html
ebe5c285ae5633de6b99ddb0822c3922 *html/annotateGenePlot.html
0aefe01f2d46957505fef705740a503c *html/arrangePlots.html
34159efff9c9b219330cc5191ae69678 *html/barplotAlleleFreqs.html
c9b438d1d7ad880614af2b2ea40ac799 *html/collapsePairs.html
7a2806a6f5bc87be43977084d4c44e49 *html/consensusSeqs.html
efc7a06a8151b252145b66cb4c73fee1 *html/dispatchDots.html
d80b06e5110bd7a6df736074a359e66a *html/excludeFromBam.html
9dd106075b6b8fe1e920ed016a829ebb *html/explodeCigarOpCombs.html
e271cb0e55640c05cb98c9b8ef8751d4 *html/findChimeras.html
804991fe19653c9ac34c755371993f6e *html/findSNVs.html
b86a9a51d24d6433b7fe18f02549ff1f *html/getAxisCoords.html
f5899061128e686e7737533f9389441a *html/getChimeras.html
6fa7385bef77014b5ec34d394c329631 *html/getInsertionsTable.html
857d5f539ffb2670430e56d8d632d2d8 *html/gol_clutch1.html
fb135dc247b44f5d7741e82d918bcbda *html/indelCounts.html
72e3cca3d8f37a2b9856115cee627488 *html/indelLabels.html
622268ce272e065d8d1d3b5e98f7b4f4 *html/intersperse.html
3fa67a6a703d2eea10f9635f5085a0ea *html/makeAlignmentTilePlot.html
439314583ebe45d80d3f643bf54549d4 *html/mergeChimeras.html
9496ee2eaf440b3db84c976c7b8419a3 *html/mergeCrisprSets.html
4897a68dac680750e54cf0ed51be949e *html/mismatchLabels.html
be3dc1a21159d1b4daca2c3b3b1ad79c *html/mutationEfficiency.html
2c55211b9040d0117fac30f43a038b8a *html/narrowAlignments.html
27e4c3c8ee17b1583a85366d6653c40b *html/plotAlignments.html
c1ef28cbd00783965f534416b4567bd4 *html/plotChimeras.html
e112389447486cc5627bed29e5ce0987 *html/plotFreqHeatmap.html
6bdd7fe53f2e3f6e68c2ff274ee6eccf *html/plotVariants.html
17eccb28afe8ff59629168e4e9467f91 *html/rcAlns.html
cd8e94075b89628ce27068dfc8bc5ed0 *html/readTargetBam.html
7072130f504ca10cc138a7314a005fe7 *html/readsByPCRPrimer.html
e2fd05666fd73bd6df6806f999bd7b4d *html/readsToTarget.html
1b9446fda43eef267e8568b8e0eb1f41 *html/refFromAlns.html
2cc5a35ec6a8492768779fe22ddf679e *html/reverseCigar.html
f4c95f04d35f9829590288fe32599d7c *html/rmMultiPCRChimera.html
07ec72d567ab1d48d30a2dde6f3949e8 *html/selectAlnRegionsHelpers.html
11fe8e7ef1c58e32579c3711d2c1f1db *html/selectOps.html
7afdadfcf11b8550281c5d96ac1dcca8 *html/seqsToAln.html
01b818d1df864a46a1b6a385f082c3cb *html/setDNATileColours.html
02c9425b7fcab8889c7f4e4d874530d8 *html/setMismatchTileColours.html
f6c66c4cf5213c1b17d419bc2ca0f47b *html/transformAlnsToLong.html
540164ccc6dcfbc8e761aff4b21ceeb4 *html/variantCounts.html
2c4186876086c5ef0bfe1fd764f745bd *html/writeFastq.html
