rcAlns {CrispRVariants} | R Documentation

## Internal CrispRVariants function for determining read orientation

### Description

Function for determining whether reads should be oriented to the target strand, always displayed on the positive strand, or oriented to

### Usage

    rcAlns(target.strand, orientation)

### Arguments

`target.strand` | The target strand (one of "+","-","*")
`orientation` | One of "target", "opposite" and "positive" (Default: "target")

### Value

A logical value indicating whether reads should be reverse complemented

### Author(s)

Helen Lindsay

[Package CrispRVariants version 1.8.0 Index]