setMismatchTileColours {CrispRVariants} | R Documentation

## Sets colours for plotting mismatches in aligned DNA sequences.

### Description

Sets tile colours for `plotAlignments` with a DNA alphabet.

### Usage

    setMismatchTileColours(m)

### Arguments

`m` | A data frame of nucleotides and plotting locations, e.g. created by `transformAlnsToLong`

### Value

A matrix with additional columns specifying tile and text colours

### Author(s)

Helen Lindsay

[Package CrispRVariants version 1.8.0 Index]