patternMatch4Parallel {CoGAPS} | R Documentation

## patternMatch4Parallel

### Description

patternMatch4Parallel

### Usage

    patternMatch4Parallel(Ptot, nSets, cnt, minNS = NA, maxNS = NULL,
      cluster.method = "complete", ignore.NA = FALSE, bySet = FALSE, ...)

### Arguments

`Ptot` | a matrix containing the total by set estimates of Pmean output from `reOrderBySet`
`nSets` | number of parallel sets used to generate `Ptot`
`cnt` | number of branches at which to cut dendrogram
`minNS` | minimum of individual set contributions a cluster must contain
`maxNS` | max of individual set contributions a cluster must contain. default is nSets+minNS
`cluster.method` | the agglomeration method to be used for clustering
`ignore.NA` | logical indicating whether or not to ignore NAs from potential over dimensionalization. Default is FALSE.
`bySet` | logical indicating whether to return list of matched set solutions from `Ptot`
`...` | additional parameters for `agnes`

### Value

a matrix of concensus patterns by samples. If `bySet=TRUE` then a list of the set contributions to each concensus pattern is also returned.

### See Also

`agnes`

[Package CoGAPS version 3.0.2 Index]