calcCoGAPSStat {CoGAPS} | R Documentation

## Calculate Gene Set Statistics

### Description

Calculate Gene Set Statistics

### Usage

    calcCoGAPSStat(Amean, Asd, GStoGenes, numPerm = 500)

### Arguments

`Amean` | A matrix mean values
`Asd` | A matrix standard deviations
`GStoGenes` | data.frame or list with gene sets
`numPerm` | number of permutations for null

### Details

calculates the gene set statistics for each column of A using a Z-score from the elements of the A matrix, the input gene set, and permutation tests

### Value

gene set statistics for each column of A

### Examples

    data('SimpSim')
    calcCoGAPSStat(SimpSim.result$Amean, SimpSim.result$Asd, GStoGenes=GSets,
    numPerm=500)

[Package CoGAPS version 3.0.2 Index]