plotPatternMarkers {CoGAPS} | R Documentation

## plotPatternMarkers

### Description

plotPatternMarkers

### Usage

    plotPatternMarkers(data = NA, patternMarkers = NA, patternPalette = NA,
      sampleNames = NA, samplePalette = NULL, colDenogram = TRUE, heatmapCol,
      scale = "row", ...)

### Arguments

`data` | the dataset from which the patterns where generated
`patternMarkers` | the list of genes generated from the patternMarkers function
`patternPalette` | a vector indicating what color should be used for each pattern
`sampleNames` | names of the samples to use for labeling
`samplePalette` | a vector indicating what color should be used for each sample
`colDenogram` | logical indicating whether to display sample denogram
`heatmapCol` | pallelet giving color scheme for heatmap
`scale` | character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. The default is "row".
`...` | additional graphical parameters to be passed to `heatmap.2`

### Value

heatmap of the `data` values for the `patternMarkers`

### See Also

`heatmap.2`

[Package CoGAPS version 3.0.2 Index]