calcGeneGSStat {CoGAPS} | R Documentation

## Probability Gene Belongs in Gene Set

### Description

Probability Gene Belongs in Gene Set

### Usage

    calcGeneGSStat(Amean, Asd, GSGenes, numPerm, Pw = rep(1, ncol(Amean)),
      nullGenes = FALSE)

### Arguments

`Amean` | A matrix mean values
`Asd` | A matrix standard deviations
`GSGenes` | data.frame or list with gene sets
`numPerm` | number of permutations for null
`Pw` | weight on genes
`nullGenes` | logical indicating gene adjustment

### Details

calculates the probability that a gene listed in a gene set behaves like other genes in the set within the given data set

### Value

gene similiarity statistic

### Examples

    data('SimpSim')
    calcGeneGSStat(SimpSim.result$Amean, SimpSim.result$Asd, GSGenes=GSets[[1]],
    numPerm=500)

[Package CoGAPS version 3.0.2 Index]