cellMatchR {CoGAPS} | R Documentation

## cellMatchR

### Description

cellMatchR

### Usage

    cellMatchR(Atot, nSets, cnt, minNS = NA, maxNS = NA, ignore.NA = FALSE,
      bySet = FALSE, plotDen = FALSE, ...)

### Arguments

`Atot` | a matrix containing the total by set estimates of Pmean output from `reOrderBySet`
`nSets` | number of parallel sets used to generate `Atot`
`cnt` | number of branches at which to cut dendrogram
`minNS` | minimum of individual set contributions a cluster must contain
`maxNS` | maximum of individual set contributions a cluster must contain
`ignore.NA` | logical indicating whether or not to ignore NAs from potential over dimensionalization. Default is FALSE.
`bySet` | logical indicating whether to return list of matched set solutions from `Atot`
`plotDen` | plot
`...` | additional parameters for `agnes`

### Value

a matrix of concensus patterns by samples. If `bySet=TRUE` then a list of the set contributions to each concensus pattern is also returned.

[Package CoGAPS version 3.0.2 Index]