Package: CoGAPS
Version: 3.0.2
Date: 2018-04-24
Title: Coordinated Gene Activity in Pattern Sets
Author: Thomas Sherman, Wai-shing Lee, Conor Kelton, Ondrej Maxian, Jacob Carey,
    Genevieve Stein-O'Brien, Michael Considine, Maggie Wodicka, John Stansfield,
    Shawn Sivy, Carlo Colantuoni, Alexander Favorov, Mike Ochs, Elana Fertig
Description: Coordinated Gene Activity in Pattern Sets (CoGAPS)
    implements a Bayesian MCMC matrix factorization algorithm,
    GAPS, and links it to gene set statistic methods to infer biological
    process activity.  It can be used to perform sparse matrix factorization on
    any data, and when this data represents biomolecules, to do gene set
    analysis.
Maintainer: Elana J. Fertig <ejfertig@jhmi.edu>,
 Thomas D. Sherman <tomsherman159@gmail.com>
Depends: R (>= 3.4.0), Rcpp (>= 0.11.0)
Imports: RColorBrewer (>= 1.0.5), gplots (>= 2.8.0), graphics,
        grDevices, methods, cluster, shiny, stats, utils, doParallel,
        foreach, ggplot2, reshape2
Suggests: testthat, lintr, knitr, rmarkdown, BiocStyle
LinkingTo: Rcpp, BH
VignetteBuilder: knitr
License: GPL (==2)
biocViews: GeneExpression, Transcription, GeneSetEnrichment,
        DifferentialExpression, Bayesian, Clustering, TimeCourse,
        RNASeq, Microarray, MultipleComparison, DimensionReduction
NeedsCompilation: yes
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/CoGAPS
git_branch: RELEASE_3_7
git_last_commit: 9d82c1f
git_last_commit_date: 2018-07-26
Date/Publication: 2018-07-27
Packaged: 2018-07-28 01:12:27 UTC; biocbuild
Built: R 3.5.1; i386-w64-mingw32; 2018-07-28 09:55:28 UTC; windows
Archs: i386, x64
