plotAvgProf2 {ChIPseeker} | R Documentation

## plotAvgProf

### Description

plot the profile of peaks that align to flank sequences of TSS

### Usage

    plotAvgProf2(peak, weightCol = NULL, TxDb = NULL, upstream = 1000,
      downstream = 1000, xlab = "Genomic Region (5'->3')",
      ylab = "Peak Count Frequency", conf, facet = "none", free_y = TRUE,
      verbose = TRUE, ...)

### Arguments

`peak` | peak file or GRanges object
`weightCol` | column name of weight
`TxDb` | TxDb object
`upstream` | upstream position
`downstream` | downstream position
`xlab` | xlab
`ylab` | ylab
`conf` | confidence interval
`facet` | one of 'none', 'row' and 'column'
`free_y` | if TRUE, y will be scaled by AvgProf
`verbose` | print message or not
`...` | additional parameter

### Value

ggplot object

### Author(s)

G Yu

[Package ChIPseeker version 1.16.1 Index]