featureAlignedSignal {ChIPpeakAnno} | R Documentation

## extract signals in given ranges

### Description

extract signals in the given feature ranges

### Usage

    featureAlignedSignal(cvglists, feature.gr,
                         upstream, downstream,
                         n.tile=100, ...)

### Arguments

`cvglists` | List of SimpleRleList or RleList
`feature.gr` | An object of GRanges with identical width.
`upstream, downstream` | Set the feature.gr to upstream and dwonstream from the center of the feature.gr if they are set.
`n.tile` | The number of tiles to generate for each element of feature.gr, default is 100
`...` | Not used.

### Value

A list of matrix. In each matrix, each row record the signals for corresponding feature. rownames of the matrix show the seqnames and coordinates.

### Author(s)

Jianhong Ou

### See Also

See Also as featureAlignedHeatmap, featureAlignedDistribution

### Examples

      cvglists <- list(A=RleList(chr1=Rle(sample.int(5000, 100),
                                          sample.int(300, 100))),
                       B=RleList(chr1=Rle(sample.int(5000, 100),
                                          sample.int(300, 100))))
      feature.gr <- GRanges("chr1", IRanges(seq(1, 4900, 100), width=100))
      featureAlignedSignal(cvglists, feature.gr)

[Package ChIPpeakAnno version 3.14.2 Index]