plotBinOverRegions {ChIPpeakAnno} | R Documentation

## plot the coverage of regions

### Description

plot the output of binOverRegions or binOverGene

### Usage

    plotBinOverRegions(dat, ...)

### Arguments

`dat` | A list of matrix which indicate the coverage of regions per bin
`...` | Parameters could be used by matplot

### Author(s)

Jianhong Ou

### See Also

binOverRegions, binOverGene

### Examples

    if(interactive()){
    path <- system.file("extdata", package="ChIPpeakAnno")
    library(TxDb.Hsapiens.UCSC.hg19.knownGene)
    library(rtracklayer)
    files <- dir(path, "bigWig")
    if(.Platform$OS.type != "windows"){
    cvglists <- lapply(file.path(path, files), import,
                       format="BigWig", as="RleList")
    names(cvglists) <- sub(".bigWig", "", files)
    d <- binOverGene(cvglists, TxDb.Hsapiens.UCSC.hg19.knownGene)
    plotBinOverRegions(d)
    }
    }

[Package ChIPpeakAnno version 3.14.2 Index]