c47d77e03c82c0524d0cc8338b55a58e *DESCRIPTION
3ff5e4ecdb3b4e9b83d0d8f8b42c2f25 *INDEX
6ecc2ef745c6d22d1ebe6aa43a695f11 *Meta/Rd.rds
37dcc05ff74e4f1d73203331ea903a1f *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
19f074ee1c2d0c9f147b6ce35171f1ad *Meta/hsearch.rds
3481014c2057e6a4f03d036425e111aa *Meta/links.rds
e059d6dd2ee605c06c0f542fbaee321b *Meta/nsInfo.rds
ba03cdfd422c922603fd0937228a330d *Meta/package.rds
adbed26fbbd1179765053d3e10a822da *Meta/vignette.rds
275a2a8b332454d472328942d1c33f0c *NAMESPACE
3be8022ca276b4eba26c82b873c32c3e *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ChIPanalyser
aa0ea44f39d0f8d0ffc3f64f1d875bad *R/ChIPanalyser.rdb
9b912ca5e4265d1b467c04d0794c1bdc *R/ChIPanalyser.rdx
14f4a7d9742dd70f5994c61b28d3970a *data/Rdata.rdb
d8ec75608b36c203f0831dca4620a1e9 *data/Rdata.rds
886645ad16673b7d889c47e9df0bb9f9 *data/Rdata.rdx
2ae5a6343698049f6edad246b1f46f2a *doc/ChIPanalyser.R
27278d10b50a4616cb849dfad47df005 *doc/ChIPanalyser.Rmd
8ff2352c0b4b0dc50011433940a6cd95 *doc/ChIPanalyser.pdf
24530c0d1d4a120f5f9e2d81c94dee95 *doc/index.html
9d6ba1483902d1aaeb112d11129ebaeb *extdata/BCDSlx.pfm
0e5651bc233fbdf6e84bd22094961a94 *help/AnIndex
7e5449cce5897009fd52aeefb30ff9a8 *help/ChIPanalyser.rdb
6ec9a3c7816bba576f541db941035115 *help/ChIPanalyser.rdx
e582b7f0c43b197ff10d3e062f234337 *help/aliases.rds
d1f286ec130a0ca6dce3b495936da7dd *help/paths.rds
e327b56d63c72b206a30f60aba81ef4c *html/00Index.html
6aa26e70511fda8b39e2ef2160192e51 *html/AllSitesAboveThreshold.html
a50a1e986ed7b7e39b16bcc686758177 *html/BPFrequency.html
e704eaf97a3824541d696c9e924c1ff0 *html/BPFrequency_-.html
29f5067c7a710ebe5200213f9cf14aa7 *html/ChIPanalyser-package.html
31bf2e7e0dbf1b6e36f76d23c6e2416d *html/DNASequenceLength.html
a00bde714526ed11b2cf2d26acd25350 *html/DNASequenceLength_-.html
b05676ac982bd36ca414ec324fa1704f *html/GRList-class.html
ea8c523f023ef7c46f8f810e06cb3440 *html/NoAccess.html
9e7abd54037b371339ce5ec2f85c44c1 *html/PFMFormat.html
81dc62de143bb549fa844287081edffe *html/PFMFormat_.html
a9bfee8cdb76a4614b9a78284afbbc45 *html/PWMThreshold.html
283415c58c0df67d49affcb0ca9c8a42 *html/PWMThreshold_-.html
d663172fa086a5543313fd22a15a4e73 *html/PWMpseudocount.html
3d1dd050ddf74bab033ed88710151cae *html/PWMpseudocount_-.html
82d9f41e7a3734f685548572ca7f448a *html/PositionFrequencyMatrix.html
4263dc5fbe727da2c4b9c190938676e3 *html/PositionFrequencyMatrix_-.html
34aedd0579f02ac4fc43db2a65bdbf69 *html/PositionWeightMatrix.html
d5d8b00480fccd1a7807fd31018165bb *html/PositionWeightMatrix_-.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
02310f0bdb2363d0049e655c36415e6a *html/ScalingFactorPWM.html
298cefe1380c4d97ff16380687f3bf3b *html/ScalingFactorPWM_-.html
1b6a79354e3e856cd9071ae22a8dd058 *html/averageExpPWMScore.html
90e76680613f88d3b1b5eae608fedaa0 *html/backgroundSignal.html
dce3f465927a89d59d1cd0668820916e *html/backgroundSignal_-.html
7aeb6739db866656483d76265015752b *html/boundMolecules.html
84485b2acf80411a98942c8a0c2edbda *html/boundMolecules_-.html
ade57063a32aa840993b41a0ec76ce9a *html/chipMean.html
613de69946915ba5b0f57932227d9736 *html/chipMean_-.html
9b26543c1a3745bc878bc56875ef0791 *html/chipSd.html
68158a8f39bdd4d46ced0b74b5fbdfc1 *html/chipSd_-.html
6891d0ba10f134215d3867683ece55e8 *html/chipSmooth.html
0416bfbdd3cdfaca957dacd51e6fa52b *html/chipSmooth_-.html
a7037718d9de8cda6530e3dbe93bb305 *html/computeChipProfile.html
bfa97110fccb145bfc2a0bd91e34a642 *html/computeGenomeWidePWMScore.html
75faaa7ad091083320bfa9fcc4b34414 *html/computeOccupancy.html
df68b54daedf9b07fda674f48e983343 *html/computeOptimal.html
dd9cb90c4cea22815d459ce6f1cbc189 *html/computePWMScore.html
869f3b001f2cf4bfa41f4016ac75c9f5 *html/data.html
0f22c664833a39e27ae16532712140d4 *html/genomicProfileParameters-class.html
faec0d3719a7b5ed2df1f394e38e2b13 *html/genomicProfileParameters.html
b0458cde83e735d618ff94279f5c4491 *html/maxPWMScore.html
cc87be5ab16e359030a268a4bc868d14 *html/maxSignal.html
7d00d03db61c03c30417c4fc101622fc *html/maxSignal_-.html
55cc853ea1185626189c26294b0713cf *html/minPWMScore.html
171735aa2a90c7b2d00bbada51090632 *html/naturalLog.html
f9c71b7f4e126199f8ed123fb201a9bd *html/naturalLog_-.html
089670e71bbf95ea18a66c2a8f5e7b2f *html/noOfSites.html
4d902606176b1a92fc923057c1e49253 *html/noOfSites_-.html
0ab9fa8e3cda39945a716dc8fb967c91 *html/occupancyProfileParameters-class.html
31ac40d324727ce9c9cdca12942c4aac *html/occupancyProfileParameters.html
044a5482fab4deeccfbb3e1181964b3a *html/ploidy.html
b5202f1942aeaf5d49cc7739f5c30edc *html/ploidy_-.html
8f59c1f900281111da7c979c9af0662c *html/plotOccupancyProfile.html
748b47b723bf4174a4e982f97d0d89d4 *html/plotOptimalHeatMaps.html
7490a1e3de053b6998c46bd1a666e138 *html/processingChIPseq.html
83d15a23c9529089a9e2a3107db77047 *html/profileAccuracyEstimate.html
e8a9676796c64e3e5a8586fd53ead1b8 *html/removeBackground.html
3e92ff9de3052f5441ace2f3e8dda95b *html/removeBackground_-.html
bdc3ac9d1e5a7e24468c3b3f3193ae76 *html/searchSites.html
17ddcfb995838bb231556bd674d0aac0 *html/stepSize.html
fcc1bac97509716d53b4591975d678f6 *html/stepSize_-.html
8c35382b7680c35d05ca584e64054bef *html/strandRule.html
6124f6973aff34a7c633940434eb1896 *html/strandRule_-.html
cf41fa10d257185ed402c7a83345eb16 *html/thetaThreshold.html
1e96661b99762f6227ec93b7b5bf22fd *html/thetaThreshold_-.html
b903f989a4743792c2c7bdf135eaacaa *html/whichstrand.html
081a0a3060dc8f6457329ba62fe00e79 *html/whichstrand_-.html
44ed2ccc83d93602cbf6b70fbe8a1248 *unitTests/GPPWithPFM.rda
1688b10abe4422ac5eab1497ecb38edf *unitTests/OccupancyAccess.rda
8fd1ec7893511fb0ea9bf454380848ff *unitTests/OccupancyNoAccess.rda
7e02b4c5d17e18806627eafd47917c49 *unitTests/PWMScoreAccess.rda
4249c273bbb2e75141c16e2f5b81d40d *unitTests/PWMScoreNoAccess.rda
268749383a8d2936cb89e0ee7eb90451 *unitTests/genomeWideScoringAccess.rda
247410aa163950613b22293046aafad9 *unitTests/genomeWideScoringNoAccess.rda
cfd15f127016f1e4e5668d1413507912 *unitTests/test_Units.R
