ploidy {ChIPanalyser} | R Documentation

## Accessor method for the `ploidy` slot in a `occupancyProfileParameters` object

### Description

Accessor method for the `ploidy` slot in a `occupancyProfileParameters` object

### Usage

    ploidy(object)

### Arguments

`object` | `object` is a `occupancyProfileParameters` object

### Details

Default value for `ploidy` is set a 2. It should be mentioned that ChIPanalyser is based on a model that also considers the ploidy of the organism of interest however this only considers simple polyploidy (or haploidy). The model does not consider hybrids such as wheat.

### Value

Returns the value assigned to the `ploidy` slot in a `occupancyProfileParameters` object

### Author(s)

Patrick C. N. Martin <pm16057@essex.ac.uk>

### References

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.

### Examples

    # Building occupancyProfileParameters object
    OPP <- occupancyProfileParameters()
    #Setting new Value for maxSignal
    ploidy(OPP)

[Package ChIPanalyser version 1.2.0 Index]