plotRegi-methods {ChIPQC} | R Documentation

## Generate relative enrichment of genomic features plot

### Description

Generate relative enrichment of genomic features plot.

### Methods

`signature(object = "ChIPQCexperiment", facet=T, facetBy=c("Tissue","Factor"))`

  Generate relative enrichment of genomic features plots for all the samples in an experiment.

`signature(object = "list",facet=T, facetBy=c("Sample"))`

  Generate relative enrichment of genomic features plots for all the samples in a list of ChIPQCsample objects.

`signature(object = "ChIPQCsample")`

  Generate relative enrichment of genomic features plots for a sample.

### Note

plotRegi uses `ggplot2` for plotting, and returns a `ggplot2` plot dataframe.

### Author(s)

Thomas Carroll and Rory Stark

### See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

### Examples

    data(example_QCexperiment)
    plotRegi(exampleExp,facetBy=c("Tissue","Factor"))
    plotRegi(QCsample(exampleExp,1))
    data(tamoxifen_QC)
    plotRegi(tamoxifen,facetBy=c("Tissue","Condition"))

[Package ChIPQC version 1.16.1 Index]