cutAndPlotResultsT1 {CellNOptR} | R Documentation

## Plot the results of an optimisation at t1

### Description

This function takes a model and an optimised bitstring, it cuts the model according to the bitstring and plots the results of the simulation along with the experimental data.

### Usage

    cutAndPlotResultsT1(model, bString, simList=NULL, CNOlist, indexList=NULL, plotPDF =
    FALSE, tag = NULL, tPt=CNOlist@timepoints[2],  plotParams = list(maxrow=10))

### Arguments

`model` | a model (the full one that was used for optimisation)
`bString` | a bitstring for T1 as output by gaBinaryT1 (i.e. a vector of 1s and 0s)
`simList` | deprecated argument kept for back compatibility. a simlist corresponding to the model, as output by prep4sim
`CNOlist` | a CNOlist, corresponding to the optimisation one
`indexList` | deprecated argument kept for back compatibility. an indexList, produced by indexFinder ran on the model and the CNOlist above
`plotPDF` | TRUE or FALSE; tells whether you want a pdf to be produced or not
`tag` | NULL or string; tells whether you want to prefix filenames with a tag (replaces the default behaviour).
`tPt` | The number of time points in the data.
`plotParams` | a list of option related to the PDF and plotting outputs. (1) maxrow is the maximum number of row used to plot the results. See plotOptimResultsPan for other fields.

### Value

This function returns plotted MSEs and list of filenames generated (if any)

### Author(s)

C.Terfve, T. Cokelaer,A. MacNamara

### See Also

gaBinaryT1

### Examples

    #load data

    data(CNOlistToy,package="CellNOptR")
    data(ToyModel,package="CellNOptR")

    #pre-process model
    model = preprocessing(CNOlistToy, ToyModel)

    #optimise
    ToyT1opt<-gaBinaryT1(
    	CNOlist=CNOlistToy,
    	model=model,
    	maxGens=20,
    	popSize = 10,
    	verbose=FALSE)

    #plotting
    cutAndPlotResultsT1(
    	model=model,
    	CNOlist=CNOlistToy,
    	bString=ToyT1opt$bString,
    	plotPDF=FALSE)

[Package CellNOptR version 1.26.0 Index]