GeneExpressionParams-class {CancerInSilico} | R Documentation

## GeneExpressionParams

### Description

Parameters for simulating gene expression

### Slots

`sampleFreq`

  how often to generate data

`RNAseq`

  generate RNA-seq data

`singleCell`

  generate single cell data

`nCells`

  number of cells to sample at each time point

`nDummyGenes`

  number of dummy genes

`dummyDist`

  function to determine expression of dummy genes

`combineFUN`

  function used to combine gene expression data

`randSeed`

  random seed

`perError`

  error for normal error model

`bcvCommon`

  error for voom error model

`bcvDF`

  degrees of freedom for voom error model

`dropoutPresent`

  whether to simulate dropout in single cell data

`dropoutMid`

  parameter for dropout distribution

`dropoutShape`

  parameter for dropout distribution

[Package CancerInSilico version 2.0.0 Index]