get.oncotator.anno {CVE} | R Documentation

## Open Cancer Variant Explorer (CVE) Shiny app

### Description

The get.oncotator.anno retrieves annotation from the Oncotator database.

### Usage

    get.oncotator.anno(x)

### Arguments

`x` | A matrix containing the columns chromosome, start, end, reference_allele and observed_allele.

### Examples

    exCase <- data.frame(chr = rep(10, 3),
        start = c("100894110", "100985376", "101137905"),
        end = c("100894110", "100985376", "101137905"),
        ref_allele = c("T", "C", "G"),
        obs_allele = c("G", "A", "A"))
    get.oncotator.anno(exCase)

[Package CVE version 1.6.0 Index]