Package: CNVrd2
Type: Package
Title: CNVrd2: a read depth-based method to detect and genotype complex
        common copy number variants from next generation sequencing
        data.
Version: 1.18.0
Date: 2014-10-04
Author: Hoang Tan Nguyen, Tony R Merriman and Mik Black
Depends: R (>= 3.0.0), methods, VariantAnnotation, parallel, rjags,
        ggplot2, gridExtra
VignetteBuilder: knitr
Suggests: knitr
Maintainer: Hoang Tan Nguyen <hoangtannguyenvn@gmail.com>
Description: CNVrd2 uses next-generation sequencing data to measure human gene copy number for multiple samples,
	indentify SNPs tagging copy number variants and detect copy
        number polymorphic genomic regions.
License: GPL-2
Imports: DNAcopy, IRanges, Rsamtools
biocViews: CopyNumberVariation, SNP, Sequencing, Software, Coverage,
        LinkageDisequilibrium, Clustering.
Collate: AllClasses.R AllGenerics.R countReadInWindow.R
        segmentSamples.R segmentSamplesUsingPopInformation.R
        identifyPolymorphicRegion.R plotPolymorphicRegion.R
        emnormalCNV.R groupCNVs.R searchGroupCNVs.R groupBayesianCNVs.R
        plotCNVrd2.R calculateLDSNPandCNV.R
URL: https://github.com/hoangtn/CNVrd2
Packaged: 2018-05-01 02:14:08 UTC; biocbuild
NeedsCompilation: no
Built: R 3.5.0; ; 2018-05-01 11:47:43 UTC; windows
