mod_summary {CEMiTool} | R Documentation

## Co-expression module summarization

### Description

Summarizes modules using mean or eigengene expression.

### Usage

    mod_summary(cem, ...)

    ## S4 method for signature 'CEMiTool'
    mod_summary(cem, method = c("mean", "median",
      "eigengene"), verbose = FALSE)

### Arguments

`cem` | Object of class `CEMiTool`.
`...` | Optional parameters.
`method` | A character string indicating which summarization method is to be used. Can be 'eigengene', 'mean' or 'median'. Default is 'mean'.
`verbose` | Logical. If `TRUE`, reports analysis steps.

### Value

A `data.frame` with summarized values.

### Examples

    # Get example CEMiTool object
    data(cem)
    # Summarize results
    mod_summary <- mod_summary(cem)

[Package CEMiTool version 1.4.2 Index]