adaptSpillmat           Adapt spillover matrix
applyCutoffs            Single-cell debarcoding (2)
assignPrelim            Single-cell debarcoding (1)
cluster                 FlowSOM clustering & ConsensusClusterPlus
                        metaclustering
compCytof               Compensate CyTOF data
computeSpillmat         Compute spillover matrix
concatFCS               FCS file Concatenation
daFrame-class           Differential analysis frame class
data                    Example data sets
dbFrame-class           Debarcoding frame class
dbFrame-methods         Extraction and replacement methods for objects
                        of class 'dbFrame'
estCutoffs              Estimation of distance separation cutoffs
extractClusters         Extract clusters from a 'daFrame'
guessPanel              Guess parameter panel
launchGUI               Launch GUI
mergeClusters           Manual cluster merging
n_cells                 Extraction and replacement methods for objects
                        of class 'daFrame'
normCytof               Bead-based normalization
outFCS                  Write population-wise FCS files
outFrames               Population-wise 'flowFrame's from a 'dbFrame'
plotAbundances          Population frequencies across samples &
                        clusters
plotClusterHeatmap      Plot cluster heatmap
plotCodes               tSNE and PCA on SOM codes
plotCounts              Plot cell counts
plotDiffHeatmap         Plot differential heatmap
plotEvents              Event plot
plotExprHeatmap         Plot expression heatmap
plotExprs               Plot expressions
plotMDS                 MDS plot
plotMahal               Biaxial plot
plotMedExprs            Plot median expressions
plotNRS                 Plot non-redundancy scores
plotSNE                 plot t-SNE
plotSpillmat            Spillover matrix heat map
plotYields              Yield plot
tSNE                    Run t-SNE
